MmuINT0069480 @ mm10
Intron Retention
Gene
ENSMUSG00000032649 | Colgalt2
Description
collagen beta(1-O)galactosyltransferase 2 [Source:MGI Symbol;Acc:MGI:2138232]
Coordinates
chr1:152504078-152506999:+
Coord C1 exon
chr1:152504078-152504205
Coord A exon
chr1:152504206-152506792
Coord C2 exon
chr1:152506793-152506999
Length
2587 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TTCTTTCCATCTCCTTACAGTTA
3' ss Score
11.07
Exon sequences
Seq C1 exon
GTTATTGACCGAGAGCTGGAGAAGACTCTGGTCATCGAGGATGATGTGCGCTTTGAGCATCAGTTTAAGAGGAAGCTGATGAAGCTGATGGAGGACATTGACAAGGCTCAGCTGGACTGGGAACTAAT
Seq A exon
GTGAGTCACAAAGATGGATAGCTCTGAAGGGCAGTCTTCTCCAAGGTACAGAGCCCAGCTGGTAGGAGACTCAATCACACTTCCTTCCATTTACCTGATTTTTACACCACAGATATCCCCAGAAATAAGAAGGGAAAGGTTGGGTGGCTGTTTCTCCCTCCGTCTACAAGGTGAGAAACTATGGGAAATTTTGTTTTGTTTTGTTTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGTTTGGTTGGTTGATTTTGGCTTTTTGTTTATGAGACTGGAGTCACCCACCTGATCAGCGGCCTCTTGACAGAGCTGAGGAAACATCCTGAGGACCACTGGGGACAATGGTGGAAATTTCACCTGCAAAGTAAAGTGGCATGTGGGCCGGGTGGGAATGGGAGTAGCACACATTCGTTTAAGAGCTAATATGTACTTGAACGTCAGCTCCCAGGACGAGGGTTGCCTCTGCAGTCCCTGATGGGGTAGGATGTGGAAGGATCTAAACCAAGCTCCTCTGTGAGGATGGGGTTGTCTAACCAGGAAAAGCACTGACTGCTAGGCTTGTGGTAGGAAGCCAGGCTCACTCAGGGAGTGCGGGCTCAGAGCTGGTACTAGTTAGTGCTCCGTCTCTTGCCTCTGAGTTAGCATCTTTTTGTTTTCCTTCCTCCCTTCTTCCCTTTCTTTCCCCCTTCTCTCCTTTTCTTCCTCTTTTCTTTGTGAAATAAGCAACACTCTCTGTTCCCTCCAATGAGGCAGAAACATCCCAAGTTTTCCAACTGTGTATCTAAGGTAATCTTGTCAAATTAGAGCCTGCTTATTTGAAACAGCCCAGCTTTCCCTACCCTTCCATCCTCAGCGAGAAAGAGAAATTTGGACCCTGATGGAACTCCTCTTTTGAACTTAAGAAAAGAATTTAAAAAGAAACCCAGCAATGATGCAACTAACTAGGAAATAAACCTCAAAAATCATACTATGTAATAAAAAGGAGGCCTTCCCCTGTCAGTTGAGTCACATGATCCATATTCTGAACAGTCTGTTAAGATCACAGTTCTAGCCTCCAAAAGTTACTGTTCTTCAGCCCTTCTGCATCTATGGAGATATATATATCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTAGCTATAGAATGTTACAGGTACATATATGATTTTAGGGCTGACCACCTGGTATTGAATATCCAATTTGAGGGTGTTATGGTTTGTATATGCTTGGCCCAGAAAGTGGTACTATTAGAAGGTGTGGCCTTGTTGGAGTAGGTGTGTCAATGTGGGTGTGGGCTTTAATACCCTAGTCCTAGCTGCTTGGGAGTGAGTATTCTGCTAGCAGCCTTAGATGAAGATGTAGAACTCTCATCTCCTCCTGCACCATGCCTGTCTGGATGCTGCCATGCTCCCACCTTGACAATTATGAACCTGTAAGCCAGCCCCAATTAAATGATGTCATTTATAAGAGTTGTCTTGGTCATGGTGTCTGTTCACATCAGTAAAACCGTAACTAAGACAAGAGATTCTTCCCAGGGCTGGGGAGCCTCCTGCTCTCAGTATTCCTAAGTTTCCTGTCATTCTTTATCTAGGGCTGAAAACCCACAAGATTTTCCCCCATCTGTTGTGTATTGGTATTGTACTTATTCAGGTCTTGTTTAAGCAGCCATGTTGTTGAGATTTCGTGGGTGTAGCTTCCCTTACACTCCTAGGAGATGCAACCTCATAGCAGATATCCCATACCTCAGATTCTTACAATCTCTCCACCCTTTCTTCCTTGATGTCTCCTCAACTTTACATGTAGGAGTTGTGTTAGAGATGGGTCAGTCGGGACTGGGCACAAGTTTTATCTCTACTGCACTTGAGAAAGTCTGACTCTGAGAACATCTGCTTGAGGTTCCTAGAAGAGCTGAAAGCTGAATATGTTCTTATTCCTTGGATCTCCATGTCTTCTTCAGTGCATGAGCAGAGTGTATAGGGGAAAGACTTTCAGAGTCGTCATTCAGACTCCCCAGAGGGAACCCGTTGGGGCTCCTCTTGGGTCTCTAGGTTCTCTACCGCAGACTCGTTCTCACTCACAGCCTTTTCTATGCTGTTTAGCGCCTGCACATGGAAAGTGGTACAGAAAGCATCTGAGGCAGAAGCTCTGGGGACATGAAGGCATGAAGACAACAAACTCAAGATTCTCACATCTGGCTTTTTTTGTTCCTTTCCAACCTCTGTAAACACAGCTGGAACTATCTTCCCAGGGAAATCATCCAAGCAACTTTTTCATCTCTTTGCATCTTCCTTTTCTGGCTTAAAGACAGACCACCAGGCCTGAATAGTTGGGGTGCCGATAAATGGAGTTGGAAAACTGACTTTATAAGGACCAATAGCAATTATGGATACTGCTAGAATGATCTCTGTGGTGGTATGCATTAGGAAAAGACACAAGAGTCCAGGCTTTAAAACATCTTTTAAAACTAAGTATGTGCTCTATTCTTATAATATTCAATATTCTAATATTCAACTTGGAACTCTTCTCTTCTTTCCATCTCCTTACAG
Seq C2 exon
TTACATCGGTCGAAAAAGAATGCAAGTCAAAGAGCCAGAGAAGGCAGTGCCCAATGTTGTAAATCTCGTCGAAGCTGATTATTCCTACTGGACCCTGGGCTACGCCATTTCCCTGGAAGGAGCACAGAAGCTTGTCGGAGCCGATCCCTTTGGGAAGATGTTGCCAGTGGATGAGTTTCTGCCAATCATGTACAACAAGCATCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032649:ENSMUST00000044311:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(22.6=100)
A:
NA
C2:
PF0175512=Glyco_transf_25=PD(32.3=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types