MmuINT0069615 @ mm9
Intron Retention
Gene
ENSMUSG00000059659 | Gm10069
Description
predicted gene 10069 [Source:MGI Symbol;Acc:MGI:3641875]
Coordinates
chr6:128452184-128453299:+
Coord C1 exon
chr6:128452184-128452381
Coord A exon
chr6:128452382-128452974
Coord C2 exon
chr6:128452975-128453299
Length
593 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TGAACCATTTGTCTGTACAGGGC
3' ss Score
7.67
Exon sequences
Seq C1 exon
GAGCGATTACCTGAAAAATGCTGTGTGCATCATTATCGCCCAGAGAGTGCTTTGGCGTGTACACGATCCCATTGTGAGTGATGTCTTCTCCGCTGATGCAGTTCTCATGGTCTTTGTACACTGGGACACCAAAGAAGGCACCCTGGACAGTCTTTCCTGGCAGCAAATTGTAGATCTGTGCATTGGAGGAGAACAAAG
Seq A exon
GTAAACTGTTTCTTGTTCTACTGCTTAAAGAATTTTAATGTGGCAATGTTCGATATGGAATTTAAGTCACCATGGTTTTAGTTACCCTTGCCATGTGTATTATACAAGGATTGAAGCAGGGAGTCACAGAAAGAGATAGAATGTCAAAGTTTCTAGCCCTCATGGGAAAATAGAATACTTGAAGAGATAGGAGATGGAGATGTAGCTCAGTTGGTAGAATGCTTGTCTAACTAACATGCAGGAAGCCTTGGATCTCATCTCCAGCACTACATAAACTAGCATGCCCTTGCAGGTGTGTAATCCCCGCACTTGGGAGGTAGAAGCATGAGGACCGAAAACTCAAGGTCATCCTTAGCCTTTGAGTTCAATGACAGCCTAGACCTTTGTGTGATTCTTTCTGAAAAAACAAAAACAAAAACAACAACAAAAAAAAAACCAACTGAAGTGAATTTATCAAAGTTGATCTGAAAGTAGAAGGATATGGAGACCAGAGTTAGTGGCTGGCAGTGTTCAGGTTCATGGTGCAGAGAGAAAGGATGGATAATGGGTACTGAGAGACAACAAAATCACTTCTGAACCATTTGTCTGTACAG
Seq C2 exon
GGCTGGACCTGGAGGCAAGATGCAGAGGCTAACCATAAAACCCGTGAGGCATTCTCGAAGCCTGTACATGAGGACGCTTCTCTGGAAACACAAAGGCATTTTAAAGACATGTTTGAGAAGAAACTGTTCTTGCCCACTCTTGAGACCAGTAAAGTGTCTGATTTCAGGGAAAGCACAAAAGACCTAGCATCTTACACAATCACCTTGAGTTGTGGCCGGCTAGCAAATGGACCAGACGAAATTTAACTTCTCTAAAACGTATTGTAGCAAAACTAACCCATCCTATTTGTGTGTTATCATTCGTAAAATGAAGTGATAAGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059659-Gm10069:NR_028593:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGATGCAGTTCTCATGGT
R:
GTCTGGTCCATTTGCTAGCCG
Band lengths:
345-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: