MmuINT0071535 @ mm10
Intron Retention
Gene
ENSMUSG00000062464 | Cyp4f37
Description
cytochrome P450, family 4, subfamily f, polypeptide 37 [Source:MGI Symbol;Acc:MGI:3780112]
Coordinates
chr17:32621691-32625266:+
Coord C1 exon
chr17:32621691-32621892
Coord A exon
chr17:32621893-32625121
Coord C2 exon
chr17:32625122-32625266
Length
3229 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TCAACCTTCTCTATTCTCAGATT
3' ss Score
9.54
Exon sequences
Seq C1 exon
CAGGATGCTGCGGCTAAGTGTGTCTGGGCTGGACCTGGGCTCTGTGGTGACCTTGTCATGGCATCTTCTGCTGCTTGGAGCGGCATCTTGGATTTTGGCCAGAATCCTTGCCTGGACTTACTCATTCTGTGAGAACTGCTCCCGCCTCAGATGTTTCCCTCAGCCTCCTAAAAGAAACTGGTTTTTGGGTCACTTGGGCATG
Seq A exon
GTGAGTATGGCGGCAGATAGGCTCAGGTATCGGGGTGTATGTGTTCCCTAGAAGTTAGGAAAGGTCTGGATCCTGTAGCAGGGAGAAGCATAGTAAGTTAGTTGGGCCACTCTCCTCATCACAACACCACATTCATTTATCTTTCTTTCCAAGTTGTCCTCATCAGCCTTTCTCTCTTCCTTACCTGGCACCAGCCTACTGTGGGCCATACTCTCAGCAGGACTGAGGATTCCTCAAGTTCCTGGATATGTGTCATAGTCAGTGGATCCCATGGTGAATAGCACAGAGTAGTGGCATCCCTGGTATATTCTGTTTCACTGCTGGATTTGAGGTCTTCCTTCAGTATGTCCAAGGTCTTGCCTCCTGTCTGGCTCATCTCTCTTGGTTTCAGATCAGTGTCTGTATCTCTCTGGTTTGCTATTTGCCCTGTAGGATTCAGCTGCGATTTCTTACCTCCACCTACTGTTTGGGTGCAGAAGAGAGATTGTAGTTTTTTTCCCTTCCACTTCTTGGCCACTGTCCTTCCTCATCTTGCCCTCTGTCCTGAAGATGCATTAGTGGGCTCCATTATGCAATGTAGGTCAAGGATGAACACTTACTTTTTAACATTGGTAGTGATTATTTGAAGTGCTTAAAGTTTGTGCATGCTAAGCAATGACTTTTTTCCAAAGGCACATCACAGCATGACCGTTTTCCTCTGGTCTCATCATGACTACACTTCCTACTCAGCACCCTTGCCTGGTCACCAGGTTCCCTTGCTCCATGCTGCCCCATGTTGCAGAACCACATCTTGGGATTAGATCACTCATAATAGGGATATCATCACCATTGCCATACATTCAAGTACTGCTTCTCTCAACAGAATCCTCTTTCCTACCAACATTCTCATGTAACCATTGTTATCCAATGTCTTCTCACCATCACCATCCTTTATGCATACTAACTTATCAGCTTCCTTACAGTTCCCTTTCATCTCCCCATGAGTTCAGATTCCTATCAAGATTTCAAGTGTGAGGTTCTTGACAATTCATTTTTTCCTTTAGGTATTTGGAAAAGTGTTACTTTTGATGACCCCCCCCCCCAAACTCCCATATGTTGTGTTTTGTTATCCACAGTGATACTGTAGAGTCAGGTGACATGTCTCCTCACATTCTTATACCTCCAATATGGTCTGGCTGTACTAAATCTCCCGTCCTTTGCTCCTCCTCCTCCTCTCCCACTTCTTCTTCACGTCCTTCTCCGTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTCCTCCTCTCCCTCCTCCTCCTCTTCCCCTCTCCCTTCCCCTCCCCCTCCCCCTCCCCCTTCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTCTCCTCCTCCTCCTCTTCTTCTTCCTCCTCCTCCTAGTCATCTTCGTCTGGCTCAACTTCTTTTTCTTCCTGTTCCTGTTCTTGTTTTGCTTGTTCTTCTTTTTCTCATTCTCCTCATCCCCTCCTCTTCCTTCTCCTACTCCTTCTACTTCTTCTTCTACTTGTACTTCTTCTACTTGTTTTTGTCCTTTTTGTTCTTGTTCTTGTTTTTGTTGTTCTTCTTGATTTTATTTTTCATTGTCTACTTGTACCTTGCTTTTCTGTGTAGCTTTGGCTCTCTTGGAACTTGTTTTGTATGCCAGGATGACCTAAAACTCACAGAGACCTGCGTCTGTTTCCCAAGGGATTAAATGTGCCAACTCCATCAGGCTTTTGCCATCTAATTATGGACAAAGGATCATTGTCATTGGCTGCTCCCTTCCATGCTTGTTTCTTATTTCTCTCACCCTTGATTACCATGTCCCTGAGTCCTGACTCTATCTCCTTCATTTTCTCACAGCTCTTTGGTGGTTTGTCCACATTTCCTGGTAGCTCCTATTTGGCTCCAGAATTAAATCCTTCTTGGTCTCCTCTTTGCTCCCTGAGGTTCTTCTCTGTCCACTGCTGGATCCTCTTCCCTCTGACCTTTCCACATGACTCCTCTGTCACCTTCTCCCATTTTCCCTCTATTGTCTTTCTTAAAACTTTCTCCTTACCTGAGGGACACAACTCCTAAGTCATTCATCAGTTCCCTGCTTAGATGACTTCCAAGTTCACACTTCTCTGGAGCTGGGGATCAATATTTGGAAACCTCTGAGATTGTTTGCTGCAATTCTTTGGAAGTTCCTGCAGAGAACTGGTCTTAATAGGTTGTGGTGAATTAGGGACAAGTGAGAGAATTGGATGGGATAAAATTAGCTGGAGGTTTATACTTAACTGGAGTGGAGGATGGAGGACTGAGGAAGGAAGGGTTGAAGAGGAGAGATAGATGATTTAGGTATAGGAAAATTCCCATAGAGAAAAAGATACAGAGATGCCAGAGAGAATGGAAAGTGAGTGATGAGATGAAGGAAATGGAGAAAAATCTGAATCATGATAAAGAAATAAATACAGAAAAATATATTGAGATCTACCACTTTAATCATTTCTCTTTGCTACCAGTTATATATCACAACTTTCGATGTAATCTACCTATGTCGTCTATCACGTAACTGTCTATATATCTTATTCATATATGTATGCATGTGTATGTATACATATATATAATCTCAGAACCCTACCGTGCATCCCCTTCTGTATATCTATCCATCTATCCTCTTTATCATCAATCCCTCTATCAAGTAGTCACATATCATCTACAATTCAGACTGTGTGTATGAATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTGATCTATCTATCTACTATCTATCTATTCATCCATCCGTCCATTGATTCTTCAATTATCTATATCTACATCACAAAACAAAGGGATAAGCAGAGTGATGTGTCAGAGAGAGCGACATGGATAGACTCATGTGTACAGGAAGGGGCACATGTAGTTGAAGTATTGACTCATCAAGGGATTGGAATGAGTGGTCCAAGCAGGATGGTTAGAGGGATGAGCATGTTAAGTAGAAAACATGAGCACCTACCATACCATGCATGGACTGGCCTCAACCTTCTCTATTCTCAG
Seq C2 exon
ATTGAGCACAATGAGGAAGGCATGCAGCTGATGACTGAAGCAGGCCAGACTTACCGAGATGTCCATCTCTGTTGGCTGGGACCAGTGATCCCTGTGCTGAGGATTGTTGACCCTGCATTTGTTGCCCCCCTGCTCCTGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062464:ENSMUST00000077639:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=21.2)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types