MmuINT0071685 @ mm9
Intron Retention
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:72338294-72339442:+
Coord C1 exon
chr8:72338294-72338490
Coord A exon
chr8:72338491-72339332
Coord C2 exon
chr8:72339333-72339442
Length
842 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TCAATCCTCTCTTCTCCCAGTTT
3' ss Score
8.32
Exon sequences
Seq C1 exon
GTGACGCTGGGTCTGTTTGAGCTGCGAGGGGCGCAGGCAGAGCGAGGACCCCGCTCCTTCTCTGCTCTGGCTGAGTGCTGTGTGCCCTTTGAACCTGGCCAGCGCTACCAGGAGTTTGTTCGGACACTGCAGCCTGGGGCCCCACCGCCGCCATCTCCGGCCTTCTGCTTCCAGGAGTTCACAGCTGTGGTGCACAG
Seq A exon
GTGTGCCCTAGGGCTGGGCTTGGAGTTTTAGTACATACTGTACCTCACCTCCGTTACCCTCTCTTGTCCTGCTCCCACCCCAGATGAGCCCCTTACTTTTCTAACTAGTCTCCATTGACTTCAATGTTTTGGAGATGTTTGCTTATTCGTTTATGAGACAGGGTTTCTCTGGGTAGCCCTGGCTGACCTGGAACTCGATCTGTAGACCAGGCTGGCCTCAAGCTCAGAGAGATCCTCCTGCCTCTGCCTCCCAAGTGGGATCAAAGGAGTGCACCTTGACTGCCTGACCCTGGGATACATTTGAAACAGGGTATCTCTAGGTAACCCTGGCTGTCCTAGAACTCACTTAGTGTCTTTTTATTTAAAGAATTATTTTTATTGACAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTACTCTCAGAGGCCAGAAGAGGGCGTCAGATGCTGTGGGATAAGCAGTTGTGAACCACCGATGTGGATCCTGGGAACTGAATGTGGGTCCTGGAAGAGCAGCCAAGAGCTCATAACCACTGAGTCACCTCTCCAGTCCCTCATGTGTTTGTTTGTTTGTTTGCTTTTAAATGGCTCAATGGCTTTCATTAGGGGTACTTACAGGATCATGGTAGACTTTTCATGAGTTATCCCCAGTCCTAGGATCTGGGGCTAGGACACTTAAGGGACCAAGATGGTCCTGGACTCCAGAGCTTTCAGTCCTGTATCCTTAGAGTCGGAACCCAGACGCCATGCACACTTGCTGTCGTCCAGGCCAGTTTCTGGGGATCAAGCCCTCAATCCTCTCTTCTCCCAG
Seq C2 exon
TTTCCCTCAGGACACAAAAAAGAAGTTTTCGGGGCCTCTACCTCCAAGGCTGGAGGAGGAGGGTTCCCCTGAGCCTGGCCCTTGGGAGGTTGCCAGCTTAGGCAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-Gmip:NM_198101:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.895
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGCTGGGTCTGTTTGAG
R:
CTAAGCTGGCAACCTCCCAAG
Band lengths:
298-1140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: