MmuINT0072416 @ mm9
Intron Retention
Gene
ENSMUSG00000030954 | Gp2
Description
glycoprotein 2 (zymogen granule membrane) [Source:MGI Symbol;Acc:MGI:1914383]
Coordinates
chr7:126592492-126593819:-
Coord C1 exon
chr7:126593574-126593819
Coord A exon
chr7:126592655-126593573
Coord C2 exon
chr7:126592492-126592654
Length
919 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
TGCCCTTTTCACTTTCCTAGATG
3' ss Score
10.52
Exon sequences
Seq C1 exon
CTCCCTGACTGTTGATGTGGACGGAGCAGGAGAGTTCAATGTCAAGATGGCCCTCTTCCAAGACCAGAGCTACACAAACCCTTATGAAGGAGCCGAAGTGTTGCTTCCAGTGGAGTCTATACTCTATGTGGGTGTCCTCTTAAATAGAGGGGATACCTCCAGGTTCAAACTGTTGCTGACCAACTGCTATGCCACCCCTTCAGAAGACAGGCATGACCCTGTGAAGTACTTCATCATCAAGAACAG
Seq A exon
GTATCAGGAAACTCTGGCATGTGTTCGTTTGTTTTTGTCATAACTAAGTTTTGAGGAAAATATTACCCAGTGTTGGCAGAGGTGTAAATTGGTTCACTCCATTTAGAAATAATTTGGTGTTACATATTGTAAGTATCCTGTTTGATCATGAATGTTAGTTCTCATATTTTAGCCTAAAGTATTAAAACAAATTGGACACGTTGGGTAAAGAAATACCAATAATTTTCCATTTCGGTTTTCTTGATAATTTTTCCATTAAGTTTACTGTTAAAACATAGCATAATTAAGTAATAATGGACCATGATGTAGATATTTACATTGATTAAGTTGAACATGATATTACACACATTATAGGACAGGATATGATTGGATGCCATTTAATGATAAAAACAAAGGAAATGCCTACCTAGAAATCGCAATTCAAATCATATTAGTGGTCCTTGGTAATACTTGTCATTGAGTTCAGCTGTATGCCAAGCACTGTGATGAGAAAATGAACACAGCAGCCCCACTGAGTGCTCATATTAGTTATATAAAATGAATGTGATTATCTCTGCTCTACAGTCAAGGGATACATGGAGGAGCTGGGGGGAAATGGAGGGCATTGTCATATTTCATTGTATATATGTAGGTAATTTTCAGTAATACAGAAAATATTTTTAAATAATGTGGAAAAACAAATAAACTAGACCATGGAGGGGCAACAAGAATGATTAACCACCCCTAGATTACTTACCTAAAAATGGAGACATGTCCCAGAAACTGTGCACCCCAAAATTTAAGCCATTCAAGCTTATTGAAGAACAATGGACTAGAAAAATGTCGTAAAAGTATAATGGAAGGAACCTGTGGCAGAGAGATCTTTACTATTCTCAGCATTTGCTTAGAAGTTTCACCTTTGCCCTTTTCACTTTCCTAG
Seq C2 exon
ATGCCCAAACCAACGTGATTCCACCATCAATGTGCGGGAGAATGGTGTGTCCTCAGAAAGCCGATTTTCAGTGCAGATGTTCATGTTTGCTGGAAATTATGACTTAGTTTTCCTGCATTGTGAGGTTTACCTGTGTGACTCCACTACTGAACAGTGTCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030954-Gp2:NM_025989:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.055
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(32.4=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGATGGCCCTCTTCCA
R:
TCAGTAGTGGAGTCACACAGGT
Band lengths:
357-1276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: