MmuINT0073452 @ mm10
Intron Retention
Gene
ENSMUSG00000027883 | Gpsm2
Description
G-protein signalling modulator 2 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1923373]
Coordinates
chr3:108702399-108703086:-
Coord C1 exon
chr3:108702865-108703086
Coord A exon
chr3:108702535-108702864
Coord C2 exon
chr3:108702399-108702534
Length
330 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATT
5' ss Score
7.31
3' ss Seq
CTTTCAAATGTATTTTCCAGGAC
3' ss Score
9.57
Exon sequences
Seq C1 exon
AATGGAAGCTTCTTGCCTTGAGCTGGCCTTGGAAGGAGAACGTCTATGTAAATCAGGGGACTGCCGCGCTGGCGTGTCATTTTTTGAAGCCGCAGTTCAAGTTGGAACTGAAGACCTCAAAACACTCAGTGCTATTTACAGCCAACTGGGCAATGCTTACTTCTACTTGCATGACTACGCCAAAGCGTTAGAATACCACCACCATGACTTAACTCTTGCACG
Seq A exon
GTAATTTCAGCCTTTTATATTCTGTCTAAATTCACTCTTAAAACAAAACCTTCTATTCACCAACAGTATATCTGAAGTGTTTTAATTTATGATATTGCTTTTGAAAACTAACTTTTAGGCAAACTAGTAATGGAGCAACCCTAGAGTTTAATTAAATGCATGAAAATTAACTAGGGAAGGCTGTTTCAATTTGTATTTAAAATAGGTTCCAAGATGAATTCATTTTATCTTGGGTCGCTTGTCCCCTAGGAAAACTGGTCTTTTACGTCTTTGTCTCTTATGTTTTAAAAATAGTTTTAACATCATTTGTCTTTCAAATGTATTTTCCAG
Seq C2 exon
GACTATTGGAGACCAACTTGGGGAAGCTAAAGCCAGCGGCAATCTCGGAAACACCTTAAAGGTGCTTGGGAATTTTGATGAAGCGATAGTGTGTTGCCAGCGACACCTGGATATCTCCAGAGAGCTTAATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027883:ENSMUST00000029482:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=WD(100=96.0)
A:
NA
C2:
PF134141=TPR_11=PD(0.1=0.0),PF134241=TPR_12=PU(64.5=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTTCTTGCCTTGAGCT
R:
CTTGTCATTAAGCTCTCTGGAGA
Band lengths:
355-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types