MmuINT0074713 @ mm9
Intron Retention
Gene
ENSMUSG00000036890 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2444269]
Coordinates
chr2:44426733-44431107:-
Coord C1 exon
chr2:44430963-44431107
Coord A exon
chr2:44426804-44430962
Coord C2 exon
chr2:44426733-44426803
Length
4159 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TCTCTCTGACATTTCTGCAGGTT
3' ss Score
9.73
Exon sequences
Seq C1 exon
ATATATTTTCAGAAGCCAAAAAGGCACTGGGCTCTTCAGTCTTGCACTGGGGCTACTTACCCCGTAAAGAAGACTATTTCCGCGTACTGTGCATGGCTGACGTTGTCATCTCAACAGCCAAGCATGAATTCTTTGGAGTAGCAAT
Seq A exon
GTAAGTCTTCTCGTCTAGGATGTGTGGTGGAACAGTCTGGAAGCAGCTTTACTAAGTGAAGCTTTGCTAACAGTGAACTTCCAGAATGCAGAGCGCAGTGATCAGGAAGAATACAGTGGAGTCTCACCATCTTTGGTCAGTGCTACACTTTCTGGTGTTGGTTCAGTTTGTCCAAGGAACTGGTGTCCTTTGTCCAGTACATAAGACAAAGGCCTAAGGGCCAACCTTTTTGATGACATCTCTCAAGAGCCCAAATTAAAGTTTTGTTATGAGAATGAACACATAATTGTTATCAGAATTTCCTCATGTGTCACAAACTGCAGATTTTAGTACCTCCCACAAATATTACCTGACCATCCACGCAAAATTATACCTCTAATGTGGTTTGGGACAAAATTGAACTACATGATGAGTGTTAATGTCTTCTGCACATCAGCACTCTGGCATGTCCTCCCTATCACCAGGAGGGCCCGGATAAATGAGTACCTTGAGCACTGTCTAATGGACATGGGTGGAGGGGGTAGCTGCTGAGTTCTTGAATGCAGGGCCTGACAGAAGAGCTCTTTTTCTCCACTGTATCTGACAGAATTGTGGTCACTACTCACAATTTTAAACAAGTTGACATAAAACCAGCATGTGTGTCATTAAGCCTCTATCATCCTAGAAAATAATGTAGATGCATATGACAGTGGTGAGACGCCTATAAATACATTTAGAACAGTCGTTGTCTTCTGACTTGAAAGTGAGAGTCAGAGTCAGTTGACTTACTCCAAACTGTATCCTTTAGAAATGAATGTCAAAAATCTCTCAGAGGATTGCCAAATTTTCTCTGAAACTTGGTCAGCCGAACTACTAAGGACAACTTCTAAACGGGCTTTATTAGAATATATCCAAAGACCTTTCAAAAAGATGATACCTATTAAATTGCCGTAGAAGGCCACTTTTTGGATACACGGGAGTTATCCAGGAATGTGCAAATAAATTGGGTACAGGAAATGGAAATAGAAATGTTAATTTTCTTCCTTAGCTGCTGGAGCAAAAGGCAGGCTTTGAACAGGACCAGGTACCAGGCCTTCCCCAGCACTGGGCAGATGGACCACTACCCCTCGGCTTCCTGCCGCCTCATTTCCTTGGTGTTTTGCAATCCTTAATGTGCACAGCTGGCAGCTGAACGCAGGTTTGATACTAACAGTTTAGACATCTTTAGATGGAGCAGATGGAAAATTTTACACAAATAAAGTAGGAGAAAGTGTGCAATTAGGTTTTTATCTGCAGTTGCATGACGCATCCTCTGTTTTAGCTTAGAACATCACCTTAGTGGGTGGCCATGAGCTCTCCTTGTATCCAGGCCCTACCTTCTTGACACCACATTTGATGTTGGCCAAATTCCCAAATCCCAAACTTTTGTTTTTGTTGAGTGTGAATGAAATAGGGAATGCAGCAATCAGCAAAGCAAAAGGCATACCATCAGAGAGACTGGAACAGTCCAGTAAATTATGGTTGCATTCCTTGCTAGTTAAGTCACTATGGTAAAATCCTTGGCAGGATTTTTTTCAATAGTTTATTCATGATGTTCATTATTATGAGTTGTAAAGAGTATGAGAATTTCATTTTTAAAATGTCTTATGGAATGTATCACTTTCTTAGATCTTGTAGACATGCTGTGGAAACCATAACATAAAATATGAGTTACTTACAATAACTAATTTTAATCCCATCTGCTAAGTATGACAACATTAGCATTTCCACTTAATTAAAAACACCCTTAAAGCAGCGATGTTTTAATCACTCCATTTTATTTACTCTCCTCCGGTGTCACTTATAATTGTAACTTTTTATTTTTTAATAATGAGGGATTTTTTTTCTCCTTGCATCACACAAAAAAAGTGCTGTCGATAATTAGCAGTCTTCTGTTATTAGTAGACTCAGGTGTCACAACTGTGTCTCATCCTCATTACAGTAAAAAATTTCACCTATCAGATTCATTATTGCTAGATAATGCGACTGAGAGCCTTTGCAGGCCCTCCAGAAAAGTAATTCAGCCAAGCAAAATTATCAGCTAATTATATTTAGAATCAAAAGCCCAACAACTATTTGCAGATAAATTGTATGAATTGAAGTGAATAGATCTGAATATTAAGATTCATAGATTTAGCTGATGATTTGTTAATTGGAATAAAAAGGTCATTTACTAGTCATTTTAACAATAGATCAATTGGAACCCTATTTATTATTTAACTGGTAGTGCATAAGGATCGAAATGATGAATAATTGTATTATCAGGAGTGTTTTCAGAATAACAAAATATGAGGAACTTATGAGTATGATGTGTGATTTATTTTTAAATATTATAGATTTGATCATGTATTTTAAAATGTACTCTCAAGCTAAATATTAACACTAGTATTTTAACAAGTCAAAACTAGCCAAAAGAGATTGTTCTGGTTGTTGAATAAGTTAGAACCTTAAGTATGAATTAGATTATTTGCAAATAAAAACTAAAATCTAGGTTGTTGTTATTGTTGTTTAATTTTCCCTCTTATATCAAATAATGCTGTTCCTGTCTTATTGTATGATGTTTTAATTGGTAGAGGCATTTTGGAAATAGTATGGTATATACTCATATGATGACTCAAAATGAAAATCAGCCTGTGATTTTCTTTTTGGGTATAGAATAATTCAAATCCATTATTGAAAAGCAGATAATCTGCACTTTCCGACATGCCTGTGACTTTACCCTTAACTTTATGTGATTATAAGAGACTGTTTATGTGTATTCGCGTTTCCGTTGGCACAGCGTTTTAGAACTGAGTGACTTCAGGCACTGGGCTTGCTTTTTTTTTTTTATGGTTTGTGAAGTGCATCAAGGTTGACATTCTCAAAAGTTTTTTGTTTTATGATTTGTACTACAGCACAGGGTAACATAGAGCTGTGCTTATCATACTTATACATTTAGGAAAGGGTGAGATAGCTTGTCTTCTGCAGTTGATAATTGGTAACTAAAACCTTTGCATTTCTATTGTGTTTGGTAACAACTTAGTATTTTTCCAAAAATTGTAGCTCAAAGTAAATACTTTTTCTTTAAACTAATTTCAGTTTAACATCATAAAAATAGGGACACCATCACCCACTTAAAAACAGTTTAAATTGCATGTACTCTGTCACTGTAAATAAACAAGGTAAACATTGACATGACTTCAGATCATTCTTGGACTGAAAAAAAATCTGCAGTTCAAAATAAATTCCGCCTTTGGTCAACATTTTGGATGCAATTCAAAGTTTCTCATAAAATAAACATATTTTAAAGAGTGTTTTGAATTTCACTGCATAATTTCTAGCCAACAGAAATGACAGTGGTATCTTCAAGGTTTGTGATACGTCAAATCAATAGCCATTATGCAAACCTAGCAGGACTGCAAGGGGCAATGCCTTCCCTCTCCTTAGCCCCCTACCCCTGGGACAGGAAGAAAACTCGCAGAGATAGTCCCTAGGAAGACTCTCAATGCAGAACTTTGTGTTTGTTTAGTAGTAAAACTATTCTGATAAAATAGAAAGTAAGCTGATTTTCAGTCAGAAGAGCAAAATGTTCATTAAAATGATCTGAACAAGAGTTTTTCCACAATTGGAGAGTTTTACATCTGCATAATAACAAATTGTTTCCAAGCACGAGCTTGAACTGAAAATGCCCATCACAACAGATTGTAAATTTTTTCTGCTGCTTTAAAAGTGCCTCGATCATTTCTACGGCTTCCCTGCTAAAGTATTTGCTATTTTATTTAAACATTTTTTGAAAAATGAACATTCTGAGTCTTTGCAGCATTATTAAGAAAAGCTGTCCATACTTTTCCATGTTGTTGAATGTGTTTATCTGCTGATTATAAAATGTGTTAAACAGTATTTTAGAAACAACAAAAATGCAGCGCTGCGCTTTGATGAATTCAGTGAACAGAGCATATGCTGCGGGTTCTGTCCCAGCAAAGTCGGGTATGGTCAATAGGCTCCCGCAAAGAGCAGCTCTGGCGGTTAGGAGCCAGCCGAGCATGATTTTTGTCCCGGGGAGCTCTGGGCTCTCTCTCACTGCTGTCTTAGACAGACAGATCCTTCTGACTGTAATGCTCACGCCTGCTGTCCTCCTGTCCTCTCTCTGACATTTCTGCAG
Seq C2 exon
GTTGGAAGCTGTGTACTGTGGCTGCTACCCACTCTGTCCCAAAGCCTTGGTCTATCCTGAGATCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036890-Gtdc1:NM_172662:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(31.4=100)
A:
NA
C2:
PF0053415=Glycos_transf_1=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: