MmuINT0075542 @ mm9
Intron Retention
Gene
ENSMUSG00000067203 | H2-K2
Description
histocompatibility 2, K region locus 2 [Source:MGI Symbol;Acc:MGI:95906]
Coordinates
chr17:34114816-34115468:-
Coord C1 exon
chr17:34115199-34115468
Coord A exon
chr17:34114992-34115198
Coord C2 exon
chr17:34114816-34114991
Length
207 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
CTGACCGCGGGGTCCCGCAGGCT
3' ss Score
5.61
Exon sequences
Seq C1 exon
GCTCACACTCGCTGCGGTATTTCCACACCGCCATGTCCCGGCCCGGCCTCGGGGAGCCCCGGTTCATCGCTGTCGGCTACGTGGACGACACGCAGTTCGTGCGCTTCGACAGCGACGCGGAGAATCCGAGGATGGAACCGCGCGCGCCATGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAGACACAGGTCGCCAAGAACACGGAGCAGATTTCTCGAGTGAACCTGAGGACCCTGCGCGGCTATTACAACCAGAGCGAGGGCG
Seq A exon
GTGGGTGACCCAGGGTCGGATGTCACAACCCCTCCATGTCCGGACAAGGAGACCTGAGATGGAAAGTTCCCGGGCCCCAAGTCCGAGGTTCGGGAGCAGAACCACAACCCAGCACTGGTCCCTTTCAGTTTGTAGGTGTCCGCTAGTGGTCGGGTCCGGCAGAACACGGGAGGGGGGTCAGGGGGTGCTGACCGCGGGGTCCCGCAG
Seq C2 exon
GCTCTCACACTTACCAGCGGATGTCTGGCTGTGAGGTGGGGTCCGACGGGCGCCTCCTCCGTGGGTACTGGCAGTATGCCTACGATGGCCAGGATTACATCGCCCTGAACGAAGACCTGAAAACGTGGACGACAGCAGACATAGCAGCTCAGATTACTGGACAAAAACTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067203-H2-K2:NR_004446:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACTCGCTGCGGTATTTC
R:
CCAGACATCCGCTGGTAAGTG
Band lengths:
296-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: