MmuINT0075543 @ mm9
Intron Retention
Gene
ENSMUSG00000067203 | H2-K2
Description
histocompatibility 2, K region locus 2 [Source:MGI Symbol;Acc:MGI:95906]
Coordinates
chr17:34112686-34114991:-
Coord C1 exon
chr17:34114816-34114991
Coord A exon
chr17:34112961-34114815
Coord C2 exon
chr17:34112686-34112960
Length
1855 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TTCTTAATTCTTCCACACAGATC
3' ss Score
9.42
Exon sequences
Seq C1 exon
GCTCTCACACTTACCAGCGGATGTCTGGCTGTGAGGTGGGGTCCGACGGGCGCCTCCTCCGTGGGTACTGGCAGTATGCCTACGATGGCCAGGATTACATCGCCCTGAACGAAGACCTGAAAACGTGGACGACAGCAGACATAGCAGCTCAGATTACTGGACAAAAACTGGAACAG
Seq A exon
GTTGGTGTTGCAGAAAGAGAGAGGGCCTACCTGGAGGGCGCGTGCATGGAGTCGCTCCGCAGATACCTGGAGCTCGGGAACGCGACGCTGCTGCGCACAGGTGCAGGGGCCGCGGGCAGCTCCTCCCTCTGCCCTGGGGCTGGGGCTCAGTCCTGGGGAAGAAGAAACCCTCAGCTGGGGTGATGCCCCTGTCTCAGAGGGGAGAGAGTGACCCTGGGTCTCCTGATCCCTCATCACAGTGACTGCACTGACTCTCCCAGGGCTCAGCCTTCTCCCTGGACAGTGCCCAGGCTGTCTCAGGAGGGAAGGAGAGAATTTCCCTGAGGTAACAACAGCTGCTCCCTTCAGCTCCCCTGCAGCCTCTGTCAGCCATGGCCTCTCCCAGGCCGGGTTCTCAGCCCACACCCACTGTCTGTGGACATGGACTCCTGTCCTGCTGAATGTGTCAGTCCTTACACCTCAGGACCGGAAGTCTCCTTACCTGATAAGAGACATGGACTCCCCTACACAAGGATGGTTCCCCCCAGCTTTTAGAACTTTCCAAAGAATACATTCTCACAGATCCTTTCCTATCTGTGGGGTTTGCGTCCCTTCAACAACCCAATTCTATCTATTCCTACAGTGGTGAATGGTCCACGAGCCTTTATGGGGTACAGTACAGGAATATAAATCGTGGAATTTCTTATTTTTTTCTCTTTTCATTTTCTTTCTTTTTTTTAAAGATTTATTCATTTTTATATCTAAGTACACTGTAGCTGTCTTCAGATGCACCAGAAGAGGGCGTCAGATTTCATTACGGATAGTTGTGAGCCACCATGTGGTTGCTGGGGTTTGAACCAGGACCTTTAGAAGAGCAGTTGAGCCATCTCTCCATCCCTCTTTTCATTTTCTTATTTCATATTTTCTTTTTTCTTTACTTTTTGGGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGAAGGTATTATTTTGCTTCTAGTCAGGTTTGGTCTGCACTGGAGTGATCCTGTTTCTCCATGCCCTTGTATTATCATGTGTATCAGTCTCCACAGGTGTCAGGGGAGGCTGCTAACCTGGATAATTAGGCAAGTTAAATCAGGGTTCTCATTAAAGGAGAGATTCCTGTGAACTTAGACTGTTTCCTGTCAGAACTAAACATCCAGAAGCCTCCTGCTCTTCCTCTGCCCCCACAAGTTACAGTGCTCCCTCCCCCCAGTGAATCAGGAATTGGACTCTGAGAGGCAGGGTCTTCTGCAATCCAGGGCTGAGGAGAGGGAAGATCACACACCCTGTGAGCCCACTGTGTTCCAGTGAGTGGGGCACTGGGGTCCACCGCTCACTCCAGGGATCCTGTGTGACATACATGTACTTTGTCCCCCCAGAGACAGGGGCTGGGAGTCATTTTCTCTGTCTACATACTTTGTGATGGCTATTCACTTAGAATGACTGTTAATGTTGGTCAGCAAGATGACCACAGTGGCAGTCTCAGTGGTGGCATCCTTTCAATAACATATGGCCCTGATTTCTGATTTTGATATGAACTCCAAAACATAATAAATTACTTATTTTCCATTCCCACTTTCATTCTGTGACTATCTCATGCTATAGAACATCACATAAGGATGGCCATGTTTACCCACTGGCTCATGTGGATTCCCTCTTAGCTTCTGAATCCCAAAAGAAAATGTGCAGTCCTGTGCTGAGGGGACCAGCTCTGCTTTTGGTCGCTAGTGCAATGACAGTTGAAGTGTCAAACAGACACATAGTTCACTGTGATCATTGGTTTAGCTGAGTCTTGTGTAGATTTCAGCTTGTATTGTTAATTGTGGGATTTCTTAATTCTTCCACACAG
Seq C2 exon
ATCCCCAAAGGCACATGTGACCCATCACCCGGGATCTGAAGATGATGTCACCCTGAGGTGTTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAATCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGCCATGTGCACCATGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067203-H2-K2:NR_004446:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.174
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTACCAGCGGATGTCTGG
R:
GCTGCCCACTTCTGGAAGATT
Band lengths:
358-2213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: