MmuINT0075621 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:35457503-35458035:+
Coord C1 exon
chr17:35457503-35457570
Coord A exon
chr17:35457571-35457765
Coord C2 exon
chr17:35457766-35458035
Length
195 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCACCGCGCGCCGCCCCCAGGCT
3' ss Score
8.13
Exon sequences
Seq C1 exon
GGCAATGGCACTGGGAAGGCTGCTCCTGCTGCTGGCAGCCGCCCTGACCCTGACCAAAACCGGAGCGG
Seq A exon
GTGAGTGCGGGGTCCGAAGAGAAACGGGCTCTGAGAAGAGGGTCGCGGCCGGCACCTGGGATGCTGCGTCCCCGCGTCGCCCACCAGACCCTCCGCCCCTTCTCCACCCACGTCCCGCGCCCTGCTCCCCTCTCGGACCACGGACCGCCGGGAGTCTCGGGAGGAGGTCCGAGTTTCACCGCGCGCCGCCCCCAG
Seq C2 exon
GCTCACACTCGCTGCGGTATTTCGAGACCTCGGTGTCCCGGCCCGGCTTCGGGAAGCCCCGGTTCATCTCTGTCGGCTACGTGGACGACACGCAGTTTGTGCGCTTCGACAGCGACGCGAAGAATCCGAGATATGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAACGGAACACACGGAGAGTCAAGGGCAGTGAGAAGAGATTCCAAGAGAGCCTGAGCACCCTGCTCAGCTACTACAACCAGAGCAAGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
-H2-Q1:NM_010390:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGCACTGGGAAGGCTG
R:
GTTCCGTTCCCAATACTCCGG
Band lengths:
254-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: