MmuINT0075649 @ mm9
Intron Retention
Gene
ENSMUSG00000060550 | H2-Q7
Description
histocompatibility 2, Q region locus 7 [Source:MGI Symbol;Acc:MGI:95936]
Coordinates
chr17:35576854-35579944:+
Coord C1 exon
chr17:35576854-35577129
Coord A exon
chr17:35577130-35579911
Coord C2 exon
chr17:35579912-35579944
Length
2782 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
CACAGCTTTCCTTCTCACAGGTG
3' ss Score
9.73
Exon sequences
Seq C1 exon
GCTCTCACACACTCCAGTGGATGTATGGCTGTGACATGGGGTCCGACGGGCGCCTCCTCCGCGGGTACCTGCAGTTCGCCTATGAAGGCCGCGATTACATCGCCCTGAACGAAGACCTGAAAACGTGGACGGCGGTGGACATGGCGGCACAGATCACCCGACGCAAGTGGGAGCAGGCTGGTATTGCAGAGAAAGACCAGGCCTACCTGGAGGGCACGTGCATGCAGTCGCTCCGCAGATACCTGCAGCTCGGGAAGGAGACGCTGCTGCGCACAG
Seq A exon
GTGCTGGGGCTGCGGGCAGCTCCTCCCTCTGCCCTAGGGCTGGGGCTCAGTCCTGGGGAAGAAGAAACCCTCAGCTGGGGTGATGCCCCTGTCTCAGAGGGGAGAGAGTGACCCTGGGTCTCCTGATCCCTCATCACAGTGACTGCACTGACTCTCCCAGGGCTCAGCCTTCTCCCTGGACAGTGCCCAGGCTGTCTCAGGAGGGAAGGAGAGAATTTCCCCGAGGTAACAACAGCTGCTCCCTTCAGTTCCCCTGCAGCATCTGTCAGCCATGGCCTCTCCCAGGCCCGGTTGTCTGCCCACACCCACTGCTATCCTGCTGAGTGTGTCAGCCCTTACACCTCATGACCTGAAGTCTCCTTTACCCGATGGGAGACATGGACTATCCTACACTAGGCTGGTTCCCCCAGTTTCTAGAACTTTCCAAAGAATACAGTCTACCAGATCCCTCCGTGTCTGTGGGGTTTGCATCCTTTGACACCCAATTCTATCTATTCCTGCAATGGTGAATGGTCACATGAGCCATTATGGGTTACCCTAAACAAATACTTTTCTTGTGTTTTTCCCCTCTCGTTTTCTTTTTATCTTTACTTTTTTTAAGGGTATTATGTTGCTTATAATCGGTTTTTCTTCGGCACTGGAATGATATTGCTCTCTCTCCCCACCATACCCCCACCCCCACCTATATCATTTGTATCAGTAGCCCTGGCTGTCGTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCAGCCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCGCTGGGATTAAAGGCGTGGGCCACCACCACTGGGCAGAAGAAAGGTTCCTGTGAGCTTAAAATGTTTTCTGGCAGAATTAACCATCCAGATCACACCTGATATCCCTGTGCCCCACCAAGTTACAGTGCTCCCCCTGGTGAATCAGAACTTGGACTCTGAGAGACAGGGTCTTCTGCAATCCAGGCCTGAGTGAGAGGGAAGACCACACACCCTGTGAGCCCACTGTGTTCCAGTGAGTGCTGCACTGGGGTCCACAGCACACTCCAGGGATCCTGTGTGACACATCTGTACCTTGTCCCCCAGAGTCAGGGGCTGGGAGTCATTTTCTCTGGCTGAGTGTCAGAGGTTCACCACATTTCTGCTACACACTCCCTGATGGCTGTTTACTTGGACTGACAGTTAATGTTGGTCAGCAAGATGACCACAGTGGTTTAGTCTCAATGGTGTCACTCTTCCAGTAGCATATGGTCCTGATTTCTAATTTAGATACGAACTCAAACACATATGAAATTTCTTATTTTCCATTCCATCTTCCATTATATAGCTGCCTATCTCGTGCTATTGAACATCACATAAGATGACCATGTTTACCCACTGGCTCATGTGGATTCCCTCTTAGCTTCTGAGTCCCCTCAGGAAAATGTGCAGTTCTGTGCTGAGGGGACCAGCTCTGCCTGCAGGTCACTAGTGCCATGACAGTTAAAGTGTTCATACAGACACATAGTTCATTGTAATTACTGATTTAACGTTGTCTTGGCAGTTTTCAGTTTGCATTTATTTATTTATTTATTTATTTAATGCATGGAAGTACACTGTTGCTGTACTGATGGTTGTTTGCCTTTGTGTGGTTGTTGGGAATTGAATTTTTTTTTAGGACCTCTCTTTGCTCTGGTCGACCCTGCTCACTCCGGTCAACTCCTATGGGTCAACTCTGCTCACTCAGTCCCTGCTTGTTCTGGCCCAAAGATTTATTTATTATTTATTATACATAAATACACTGTAGCTGACTTCAGATGCACCAGAAGAGGGCGTCAGATCTCATTACAGATGGTTGTGAGTCACCATGTGGTTGCTGGGGTTTGAACTCAGGACCTTCAAAAGAGCAGTCAGTGCTCTTACCCTCTGAGCCATCTCCCCAGTCCTCAGTTTGTCTTCTTAATTATGCGATTTCTTGAATCTTCCAAACAGATCCCCCAAAGGCACATGTGACCCATCACCCCAGGTCTTATGGTGCTGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTGACATCACCCTGACTTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGCCATGTGAACCATGAGGGGCTGCCTGAGCCCCTTACCCTGAGATGGGGGAGATGGGGTAAGGAGGGTGTGGGTGCAGAGCTGTGGTCAGGGAAAGCTGGAGCATTCCGCAGACTCTGAGCTGGTCAGGGCTGAGATCTGGGATCATGACCCTCACCTTCATTACCTGTACCTGTCCTCCCAGAGCCTCCTCCATACACTGTCTCCAACATGGCGACCATTGCTGTTGTGGTTGACCTTGGAGCTGTGGCCATCATTGGAGCTGTGGTGGCTTTTGTGATGAATAGGAGGTGAAACACAGGTAGGAAAGGGCAGGGTCTGAGTTCTCTCTCAGTCTCCTTTAGAAGTGTGCTCTAATCATTAATGGGAAACCCATCTACACCCCACATTGCTACCTTCTCCAACTGGGTCCTCTGTCAGTTCTGGGAACTTCCAAGATCTTCCTTGAACTCTCACAGCTTTCCTTCTCACAG
Seq C2 exon
GTGGACAAGGAGGGGACTGTGCTCCAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060550-H2-Q7:NM_001198561:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(49.2=94.6)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: