MmuINT0075653 @ mm9
Intron Retention
Gene
ENSMUSG00000055413 | H2-Q8
Description
histocompatibility 2, Q region locus 5 [Source:MGI Symbol;Acc:MGI:95934]
Coordinates
chr17:35531302-35532577:+
Coord C1 exon
chr17:35531302-35531571
Coord A exon
chr17:35531572-35531755
Coord C2 exon
chr17:35531756-35532577
Length
184 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CTGACCACTGGGTCCCGCAGGCT
3' ss Score
6.59
Exon sequences
Seq C1 exon
GCCCACACTCGCTGCGGTATTTCCACACCGCTGTGTCCCGGCCCGGACTCGGGGAGCCCCGGTTCATCATCGTCGGCTACGTGGACGACACGCAGTTCGTGCGCTTCGACAGCGACGCGGAAAATCCGAGGATGGAGCCGCGGGCGCGGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAGACACAGGTCGCCAAGGGCCATGAGCAGAGTTTCCAAGGGAGCCTGAGGACTGCACAGAGCTACTACAACCAGAGCAAGGGCG
Seq A exon
GTGAGTGACCCCGGGTCGGAGGTCACGACCCCTCCACGTCCCGAAACAGAGGCCGGTGAGGTCCCGGGTCCAAAGTCCGAGGTTCAGGAGCAGAACTGACCCAGGACTGGATTCCCTTTCAGTTTGGAGGAGTCCGCGGTGGGGGGGGGGGGGGGGAGGAGGGACTGACCACTGGGTCCCGCAG
Seq C2 exon
GCTCTCACACACTCCAGTGGATGTATGGCTGTGACATGGGGTCCGACGGGCGCCTCCTCCGCGGGTACCTGCAGTTCGCCTATGAAGGCCGCGATTACATCGCCCTGAACGAAGACCTGAAAACGTGGACGGCGGCGGACATGGAGGCACAGATCACCCGACGCAAGTGGGAGCAGGCTGGTATTGCAGAGAGAGACCGGGCCTACCTGGAGGTCGCATGAGGCTCCGCAAATACCTGCAGCTCGGGAAGGAGACGCTGCTGCGCACAGGTGCAGGGGCCGCGGCTGGGGCTCAGTCCTGGGGAAGAAGAAACCCTCAGCTGGGGTGGTGCCCCTGGCTCAGAGGGGAGAGAGTGACCCTGGGTCTCCTGATCCCTCATCACAGTGACTGCACTGACTCTCCCAGGGCTCAGCCTTCTCCCTGGACAGTGCCCAGGCTGTCTCAGGAGGGAAGGAGAGAATTTCCCTGAGGTAACAACAGCTGCTCCCTTCAGTTCCCCTGTAGCCTCTGTCAGCCATGGCCTCTCCCAGGCCGGGTTCTCAGCCTACACCCACTGTCTGTAGACACTGACTCCTGTCCTGCTGAGTGTGTCAGCCCTTACACCTCAGGACCTGAAGTCTCCTTTACCCGATGGGAGACATGGACATCTACACTAGGCTGGTTCCCCCAGTTTCTAGAACTTTCCAAAGAATACAGTCTACCAGATCCTTCCCTGTCTGTGGGGTTTGCATCCTTTGACACCCAATTCTATCTATTCCTGCAATGGTGAATAGTCACATGAGCCATTATGGGTTACCCTAAACAAATACTTTTCTTGTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055413-H2-Q8:NM_023124:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGAGTTTCCAAGGGAGC
R:
CTCTGCAATACCAGCCTGCTC
Band lengths:
252-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: