MmuINT0075674 @ mm10
Intron Retention
Gene
ENSMUSG00000053835 | H2-T24
Description
histocompatibility 2, T region locus 24 [Source:MGI Symbol;Acc:MGI:95958]
Coordinates
chr17:36005695-36014696:-
Coord C1 exon
chr17:36014557-36014696
Coord A exon
chr17:36006790-36014556
Coord C2 exon
chr17:36005695-36006789
Length
7767 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGGTTGTTCCCACCCTACAGGTC
3' ss Score
9.92
Exon sequences
Seq C1 exon
AGCCTCTTCAGCTCACCACGCCCACGACAGGAGTATATGCTAGGGGAAGCTGTAGTCCTCAAGCAACCTTGCTGAGTGTCCTTGCGTTTCCTTTATTTGGCATAGTACTTGTGTTTGGACTTACCCGCTACAAAACTCAG
Seq A exon
GTAGGAAAAAGGAGGTCTGGGTGCCCTGTGTTGGAAGGAGGGTCAAAAGTCAAGTTGTAAACTCTTGTCATAGGGCCAATATGGTGACTTTCTGTGGTATAGCAAAGGCTGGAGGGCTGGTAGGCTGAGAAACTGCAGGTGAGAGGAGCTAGAGACTATTACACCACCGAGGCCATCCCAGGCACCCAGAGGCCAAGGTATGGTATGCTGGTATGGCTGCTTCCAGCCTCCAGGATCTCTCCCTGAGCATGGATGCCCCCATGTCTGAATGCAGTTCCAGGAGCATCACCTGTGAGACCCAAAAAGTCCCAAAGTCTTATTAGACGCGTTCTCACGCCCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCCAGAGTGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTATTTTAGGAGAGTTATCCCTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGAAGAACCACCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACATCTCCCCCTTTCCTTTTAATAAGAGCAAATAGGCCACCCATATTAATGAGAGTGGAGATAGAGGTCAAATCCCCAGTGTGTAGGTAAAGGAGCCATGTACAGGATTAGCTCTTAGGCTCACAGGCTTTTACCCAGAGCAACCCTGACCTGCTCCCGTGTCGTTTTGCCTGGGGGAAGGGAACTAGGACACTGAACCTTCATGAAAGATGACATGTCTCCCTAGAATAGGCTCATATATGCCGCAGAGCCTTTCCATTGCAGTGCTTAGCCGTGCAACTCTCTCGGGCTGCTGAAGCACACTCACTCTATCCCGTGCAATGAGACTAGCCTCATGGGATATAAGAGCTGAGTGGCCAGCGACCTATTGCCTAAGCATAGATATATCAGGGGAAGCTCCATGTTCTAGTCCTGCAAGCGCCTGGGCAATAACCACCTTGTCTCTCCTAGTTTGGGCCTTAAGCTTACAGACCAATCAAAGAAGCAACACTAATCCACAGCAAAGTGTATCTCCAAATAATATTAATCCCACCCATTTTTTAAAGAAGGAAAATGCTGAGGAGATCCAATTGGGTAATCCTTTGGTCAGCGACAGGTCCAAGCGCGTGGAGTTGACCTGAAGTCTCAATTCCCGAAGGATCTGTTCAAATTCAGCCATCCAATTCTGTAACATATACTGAAAAAGACTTTTTGACAAATTAGCTGCCCTAGTAAATTTAACATACTGAATGGAAATAACACACAATCCCGGAAACTTTTGTTCACATCCCAGCTGAGTTATTTGTCATAATACATCTAGTTGTATCTGGACAAGATCTATGAGTTGATTAACCAGCATGAGACCTCTCTGTATCTTGACATTAGCTGAGGCCTGTTCATCTATGACTGTAGTCACTGAGGCTGACAAAGTGTTAATGGTGTCAGTCGTCTGGACCTGTCCAGACAGAGCCAAGGCTGTCTGAATTAAGGCTAAACCCAGTTCCTAGTTAGTGGTAAAAAAGCAAGAGAATACTTGAGCATTATACATCACCGTCATTGGGAGTGGAAATGTCGACATTATCCCCCAACGCTGCTCTCTCTTTATTATTGACGCCCTGGACATCACCAAGACGAGGGACATCAGTATTCCCTTGGTCAGTCTGGATTTTTCGGGTGAGTCTTTTTGGTATCCAAAATGGGTTGTCTTCATTCTGTGGGAAAACACAGATAGCTCCCCTGGATCTTATCAAAATAGGATCCGGGCCATACCATTTATTATCAAGGACATTTTTCCATTTAACCATCTCATTGGGCCTATCTGGCTCTGTACAATGACGTTCAGCCGCAGTATGGCCATGAGCATCAATATTTAAAAAATTGAGTGTAAAGAGTGCCAAAGACACCGACACTCTTGGTGCTTGGGGTAAAATCTCTTCAATTCCCCTCTTCTGTTTTATAAGATAGGTTTTGAGGGTGCGATGCGCACGCTCAACAATACCCTGTCCTTGAGGGTTGTATGGAAGTCCAGTCAGGTGGGTTACGTCCATCTGACGGCAGAACTGCTGAAATTTTTGAGACGTATAAGCTGGTCCATTATCAGTCTTAAGGAGTCTGGGTTTCCCCCAAGCACTCCATGCCTCAAGACAATGTTGAATCACATGTGAGGCTTTTTCTCCGGTTAACGGAGAGGCAAACATGATGCCAGAACATGTGTCAATGGACACATGGAGATATTGAAGTTTTCCAAAGGAAGAAACATGTGTAACATCCATTTGCCAGACCTGTAGAGGTCGAATACCGCGTGGGTTAATTCCCACATGAGGAACTGGCAAGAACTCACAGCAGCTTTGACATTGAGTAACAATGTCACGGGCTTCTTTTCTTGTCAAGGAGAAACGACTGCGTAATGTTTCAGCCGTCACATGAAAATTGTTATGAAAATTTCTTGCAGCCTCTACCGGGGATGATAGGGCAGCAGCCACCACTTTAGTGGCCTTATCTGCCAAATCATTTCCCAGAGCCATGGGGCCAGGTAGGCCTGAATGGGCTCTAACATGAGTAATATAAACAGGAAATCTTCTAGATAACAAAACTAATTGTATCTGCTGAAAAATATTGGCAACTCTACTGGAAGGCTTAATCACTCCAGCCACTTCTAAAAGATTTACTGCATTAACCACATAACAGGAATCTGACACAATATTAAGGGGTTCTAAAAAGGTTTTTAAAACTTCTAAGACCACTAAACATTCTACCACTTGAGGTGAATTTTCATTATATTGTTTGGATACCACTTTACCATTAGCCACATAGGCACCTATGCCAGTTTTTGATCCATCAGTATATACCACAATCCCATTTTTAAGTGGGTTTCTTACTGTTATTTGTGGAAACACAACAGATTGATTTTGGGCAAACTGTAAGATTGGATGTTTTGGATAATGGTTATCTATTTTTCCTGAAAAGGAGGTAACTAAAACTGCCCAATCATTAGATGTGGCTGCCAAGGTTTGAACCTGTGCAGCGGTATAAGGTACAATTAAAAGATATGGACTTTGCCCAAAGTGGGTGATTGCTGCTTTTAGGCCTTTAAGGGCAAGCTGTGCAATTGCATCAGGATACCAATCTATTATTTTAGCTGGGGATACGTTTGGATGGATCCACAACAATGGCCCATTCTGCCACAAAACTGCAGTTGGCAATTGTGCTGTCTTAAAGACACACAAACTGAAAGGCTGCGAATCCTCAATACGTTGTAATTGTGCATTCTGTAAGGCTTTTTCCACTTTTTGTAAGGCCTGGTTAGCAGCTAGAGTAAGAGTCCTAGGGGAGGAGATATGAGGATCTCCTTCTAAAATACCAAACAAAGGCCTTAACTCAGCGGAAGGAATCTTTAAAAAAGGTCTGAGCCAATTAATATCTCCCAACAGCTTTTGAAAATCATTTAAGGTATGGAGGTGATCTCTTCTTATCTCTACCTTTTGGGGCACAATCTTATCTGGGGACACCACAGAGCCCAAGAATTGTCCTGTATCAGAAATTTGGACCTTTTCTGTGGCTATCTGTAAACCCCACTGACTTAAAGTTTTAAGTAGAAAAGGATATGCCTTTTGTAGCATGGTAAGGTCTTTATGGCACAGGAGGATGTCATCCATGTAAAGGAGCAAAATTAAAGAGGGGAATTGTTCCCTCACTGGCAAAAGAGCTTCTTGCACATAAAGTTGGCACATTGTAGGACTATTGGACATTCCCTGTGGTAAGACCTTCCATTGATACCTCTTATCAGGTTCCATGTGATTAATAGAGGGGATGGTAAAGGCAAATCTGGGCCTATCTCTTGGACACAAAGGTATAGAAAAGAAACAATTTTTAATATCTATAATAATTAAATTCCAGCCACGTGGTAAGGCGGAAAGTACAGGGAGACCCCTCTGTACTGGGCCAAATAAGTTCATTTGCTCATTAATGGCTCTGAGGTCATGGAGCAGTCTCCACTTTCCTGACTTTTTCTTAATTACAAAAATTGGAGTATTCCAAGGTGAGGTAGAGGGTTCAATATGGCCTAATTTTAATTGTTCCTCTACCAGTTGAATCACAGCTTCTAGTTTTTCAGAGGATAGGTGCCATTGAGGAACCCACACTGGGTCCCCTGTTTTCCATGGTATGGGTCGTGCTGCCCCAATGGCCGCTATGGAAAACCCAGACCCTGTCTGTCTTGGTTTCCATTAGGTGAGATGGGCTCTATCCTTCCCTGTTCTTGATGTCCTAACCCTTTTCCTTCTTTATAACCCATCTTTGCCATGATATTTTTTGCTTTAGCTGAATACCCTCCCGATGGGGCGTTTTCATTGGACAAAATAAGGCCCAAATGCTGCATAATATCCCTTCCCCAGAGGTTAACCGGGAGTGGGAGCACATAAGGTATGAATTTCCCTTGCTGTCCTTCAGAGGATTCCCACGTCAAGGCAACGGAGCTTATAGTGGGACATGATTGATATCCTAGGCCCTGTAATGAATGAGATGACTCTGTGGTGGGCCATGCTTTGGGCCACCAATGTGTAGAGATTATACTTTTATCTGCTCCGGTATCAAGGATGCCTTCAAACTCTTTTCCGTTGATCTTAAGGCGGAGCTTAGGTCTATCATTTAAAGATACAACCAAATAGGCAGAATCATTTCCTGAGGAGCCCATTTTCTTTATCTCAGGTCCTGCAAATTTCTCCCTGGTATTATCAGGGAGGAGCAGCAGCTGAGCTATCCTATCTCCTTTACTAATAGAAAAAACGCCTTTAGGGCTTGAGCACAGGACCTGTATTTCAGGGGAATGTTGACAATCCATAACTCCAGGGTGGACTACTAAGCCCTGCAAGGTGAGTGAACCCCGGCCGAGAATAAGGCCCATGGTTCCCGGGGGCAAGGATGGTATAGGCTCCACCGGCACCGGCTGAATACTCATTTGAGGCATTAATAGGAAGTCGGAGGCGGCACGCAGGTCCACCCTTGTGGGTCTTCCTGGGTCGCCTCTCTGACTGTTTCCTGGGTCCTGACAAACCGGTTCCCATATCTTTGAGGGCCCTGGGACCGAGGGCCCGATGACCCGTTTTTTGGCACATAAGCTGATTGACTATCAGGTGGGGGAAGGACTCTGCCCTTTATATCCCTCACAGAGCGACACTGGTCAGCTCTATGATAACCCTTGCCACACTTAGAGCAAAGAGTGAGAGTCCCCCCCTGTTTATCTGGAGCTCTGCAATCTTTCTTAAAATGCCCAGGCTTTCCGCAATTAAAACATGTCCTCTGATCATTTCTGCCCATGGAGCGGTTCTGGGATTGAAGGATGGCAGCCGCTAAACCTGCATTGCTGAGAGGTCCCCCAAGCTCTCGACAGACCCTGAGCCAGTCTTGTAAGCCTTTGTTCTTTCTTGGGGCTATGGCCGCTCGGCACTCCTTTGTGGCTTGCTCATAGATTAGCTGTTCTATCAGAGGCGCAGCTTGCTCTGACTCTCCAAAAATACGCTCTGCTGCCTCTGTCATTCTGGCCACAAAATCTGAGAAGGATTCCTGAGGTCCCTGGATTATCTTTGTTAACTGCCCAGTGGTTTCACCTGCTCGAGAGAGCGCCTTCCAGGCCCTAATAGCCGTGGAGGAAACTTGGGCATAAGCTCCCCAATGGTAGTTTGTTTGATCAGCAGAATAAGCTCCCTGACCCGTTAACAAGTCAAAAGTCCAATCTCTCTGCTCTGGAGTCAAAGCAGCTGCGTTTGCTCGGGCCTGCGCTTGTGCAGCTTCATGCCAAAGAGCTCTCCATTCCATATATTTGCCCATACTAGGGAGAGCGGCTTTTACAACCGTTTGCCAGTCAGCAGGAGTTAGTGCCATGCCGGCGAGCCTCTCTAACTGCACCAAGGTAAAATTAGCATTGGTTCCATATTTACGGACCGACTCGGCGAGTTCTTTAATTTGTAAGTATTCTACCGGAGCGTGGACACGCCCACCCTCGGCTCCTTCAAAGACTGGAAATGCCTGTTGTATTTTCCTTTGTTCCTCTCTGGGAATGAATGAGTCTGCGCACTGCCTCTCTGCGCACTGCCTCTCTGCGCATCTCTCTGCGCATTGCCTCTCTGCGCATTGCTGACGCACTACGCAGGGCGGGGGCTCCGCATAGGGCGGACCTTGAAGCCGACTGCCCTGAGGCCAATCAGCAAACTGGCCTTCGCCAGCCGCTTTTGGCTTCCTTAACTGATTAGCTAGCACTTTACCTGGCTGGTACCCTTTTTTCTCATAATGAGCTGCTTCTTCCTCCCAGTCTGTTTCTTCAGAGGAGAATTCTTCATCTGCTTCAGAGCTACTAAGAGCTGGCTCCCCGAGCCCATCCAGCGATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGATCTTTCTTCTTTTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTATTCCTACCTAACCTTAACTTTTCCTCAGGTTCAAGACCCTTGGAAAGGCCTGTATACTTATTTTGTGTACCATATTTTCTCTTTGCTCCTACTCTCTCTCCCCGCTTTACTTCTGATAGATTGTCCTGAATTTCCTCTAGAATCAGCCCTATCTTAATCACTTGATAACATGTGAAAAGGAACAGAAGGGCTCCTAACACCAGAAAAAATTCAAGGCCAAACATATTCCACTTTACTTCTGATAGACTGTCTTGAATTTCCTTAGAAAGTTCAAGATCAGACTTACCTCGTAAAGCTGTACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGTTCTGAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGACGCGTTCTCACGCCCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCCAGAGTGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTATTTTAGGAGAGTTATCCCTCGCCTAGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACATGGAGTGAAGAACCACCCTCGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACACCAAAGCACCTTCAAAGTGAGCCTGCTTCTCAGGGAATAAAATGTCTCAAGGCTCGCCTCCCTCAATGCCTGAAATTCTTACAGGAGATTAAGTGGAAATTAGCCAGGCTCCCAAGTGCACCAGTGAATCTGAGACAGCATGTAACAGAAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATATGGCTATGTGACTATAGGGGTCTATATGAGAATTATGGCCTTTTCCATGAATATGTGCATTTCTGTACATAGCATGTATGTGCATATACACACGTTTTGCTCTCGGATATCTCACAGTTAACTTCATACTGGTTGTTCCCACCCTACAG
Seq C2 exon
GTCAGAAGAAAGAACTGGCCTGCTCCATCTGTTCCTGAAGAAGAGAGGCTCTAGGACAGGACCCAGGGACAATGTAAATAGTTTACAGCTCAAGGCAGACCTGGCCATGATCCTCAGAGGACACAGGTTTCAGTGAAGAGCCTGGGCTACGCTTGCTTATATTGTGTAAGGCTTGCTGCTCTTTTTTTTTTTTTTTTAAGATTTATTTATTTATCTACTATATATAAGTACACTGTCGCTGTCCTCATACACTCCAGAAGAGGGAGTCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACGGTGCTCTTAAGCACTGAGCCATCTCTCCAGCCCCGCTTGCTGCTCTTAGCTGAAGAGAGGCACAACTAAGCACTGGCATTGCTGTTGACCCTGGTCCTTTCTGCTGACTTGGGCTGAGGCTTGGCTGTGTCTGCTAGGTAGTGCCACTGCTGCTGATCTGTGTTTGATATCCTGACTCTACCGAGCTGGACTGCTGGCGTATCCGTGAAGAGTTTGTGAGTGGATTGAACTGCTACTGCTAACCTGTATGGGGTAGTGAACCATGAGAGGAAGCCTGATAAGGTCGAGCTGGGCTTGGATTTGGGAAGCCATGGAAGGTAGGAATTTGGAAAACTCTGTTGCTAAATATGATTTGAACTGTACGACCTGGGCCAAGAAGTTTCAGTGGAGAAGAATTTCTCGGTATGTGGCCTACAGACTGTTTTTGCAGTATTTCGGTGAGGTGAAGAATCTGCCTGAGGCTAAGGTGAAGAGTCTCAGATTAACAGCACTGACAAAGAAGTCTCGAAAAAGCCCAGCAGAGACTTTGGTTAAGATTCATGAAGAGCAACGAGCATGTTAAGCTGAGAAAGGAAAAACACAAAATATACAGTTCAAGTATTAAAGGGGCACCAGGAAGTGAAATGGAGATAACAGATTAAGGGATTTGGGGCAAGATCCTACCCAGCTTAATTTAGATCCAGGCAAGGTGGTACAAACCTTTAATCCCAGGAGACAAAGACAAACAGATCTCTAAATTCAAGGCCAGCCTAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053835:ENSMUST00000113760:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types