MmuINT0075689 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:35516562-35517118:+
Coord C1 exon
chr17:35516562-35516652
Coord A exon
chr17:35516653-35516764
Coord C2 exon
chr17:35516765-35517118
Length
112 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CCGCCCCTTCTCCACCCTAGCCC
3' ss Score
7.45
Exon sequences
Seq C1 exon
AGATGCCCAGAATCCCAGAGGGGAGCAATGGCGTCAACAATGCTGCTTCTGCTGGTGGCAGTCGCCCAGACCCTGATCGAGATCCGCGCGG
Seq A exon
GTGAGTACCGGGTCCGGAGGGAAATGGCCTCTGAGGAAAGGGGAGGGGGCGGCACGGGGGAAGCCGCGTCCCGGCGTCGCCCACCTGACCCTCCGCCCCTTCTCCACCCTAG
Seq C2 exon
CCCCGCGCCCTGCTCCCCTCCCGGCCCGCTCACCCGCCGGGGGTCCCGGAAGGAGTTCGGGGTCTCACCGCGCCCTGCCTCCAGGCCCACACTTGCTGAGTTATTTCTACACCTCCGTGTCCCGGCCGGGCCTTGGGGAGCCCCGGTTCATCTCTGTCGGTTACGTGGACAACACGGAGTTCGTGCGCTTCGACAGCGACGCGGAGAATCCGAGATATGAGCCGCGGGCACCGTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAAACACAGAAAGCCAAGGGCAATGAGCAGATTTTCCGAGTGAACCTGAGGACCCTGCTCAGCTACTACAACCAGAGCGCGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
-H2-gs10:NM_001143689:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGACCCTGATCGAGATCC
R:
CGCGGCTCATATCTCGGATTC
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: