MmuINT0075691 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:35517306-35520078:+
Coord C1 exon
chr17:35517306-35517581
Coord A exon
chr17:35517582-35519802
Coord C2 exon
chr17:35519803-35520078
Length
2221 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
TTCTTAAATCTTCCACACAGATC
3' ss Score
8.54
Exon sequences
Seq C1 exon
GCTCTCACACTATTCAGGTGATCTCTGGCTGTGAAGTGGGGTCCGACGGGCGCCTCCTCCGCGGGTACCAGCAGTTCGCCTACGACGGCCGCGATTACATCGCCCTGAACGAAGACCTGAAAACGTGGACGGCGGCGGACATGGCGGCACAGATCACCCGACGCAAGTGGGAGCAGGCTGGTGCTACAGAGAAAAGCAAGGCCTACCTGGAGGGCGCGTGCGTGCAGTCCCTCCGCAGATACCTGGAGCTCGGGAAGGAGACGCTGCTGCGCACAG
Seq A exon
GTGCAGGGGCCGCGGGCAGCTCCTCCCTCTGCCCTCGGGCTGGGGCTCAGTCCTGGGGAAGAAGAAACCCTCAGCTGGGGTGATGCCCCTGTCTCAGAGGGGAGAGAGTGACCCTGGGTCTCCTGATCCCTCATCACAGTGACTGCACTGACTCTCCCAGGGCTCAGCCTTCTCCCTGGACAGTGCCCAGGCTGTCTCAGGAGGGAAGGAGAGAATTTCCCTGAGGTAACAACAGCTGCTCCCTTCAGTTCCCCTGTAGCCTCTGTCAGCCATGGCCTCTCCCAGGCCGGGTTCTCAGCCCACTGTCTGTAGACACTGACTCCTGTCCTGCTGAGTGTGTCAGCCCTTACACCTCAGGACCAGAAGTCGCCTTTAACTGATGGGAGACATGGACTACCCTACACTAGGCTGATTGCCTCAGTTTCCTGAATTTTCAAAAGAATACATTCTCCCAGATCCCTCCCTGTCTGTGGGGTTTCCACCCCTTCGACAACCTAATTCTCTCTATTCCTATAGTGGTGGTCACATCAGCCCTTATGGGGTACCCTGGAGGAATATCAATAGTGGAATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGATTTTTTGAGATAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGATGGCCTCGACCTCAGAAATCCGCCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGCGTGTGCCACCTTGCCCAGCCTTTCTTATTTCTTTACTTTTTTTTTTTTTTTTGGAGGGGGTAATTTTGTTTCTAGTCATCTTTTGTCTTTTGTCTGCACTGGAGTGATCCTGTTTCTCCCTGCCCTTATATTATCATGTGTATCAGTCTCCACAGGTGCCAGGGAAGTTAAGACAAGTTAAATCAGGGTTCTCTTTAAAGGAGAGATTCCTGTGAACTTAGACTGTTTCCTGTCAGAACTAAACATCCAGAAGCCTCCTGCTCTTCCTCTGTCCCACAAGTTACAGTGCTCCCCCCCCCCCCCCAGTGAATCTGGACTTGGACTCTGAGAGACAGGGTCTTCTGCAATCCAGGGCTGGAGTGAGAGGGAAGACCACACACCCTGTGAGCCCACTGTGTTGCAGTGAGTGCTGCACTGGGGTCCACAGCATACTCCAGGGATCCTGTGTGACACACCTGTACCTTGTCCCCCAGAGTCAGGGGCTGGAAGTCATTTTCTCTGGCTGAGTGTCAGAGGTTGACACCATTTCTGCTACACACTCTGTGATGGCTGCTCACTTGGACTGGCGGTTATGCTAGTTAGCAAGATGAACACAGTGGTTTAGTCTCAGTTGTCACACCCTTCCAGTGGCATATGGCTCTAATTTCTACTTTTGATACGAACTCAAACACTTATTAAATTAGTTAGTTTCCATTCCATCTTCCATTCTAGTCCATTCATGCTAAAGAACATCACATAAGGACTGCCAGGATGACCCACTGGCTCATGTGGATTCCCTCTTAGCTTCTGAGTCCCCCAGAAAAATGTGCAGCTGAGGAAACCAGCTCTGCCTGCAGGTCACCAGTGCCATGACAGTTGAAGTGTCAAACAGACACATTGTTCAGTGTCATCAGTGATTTAACTGTGCCTTGTGTAGATTTCAGAGGGTCTTGTTAATTGTGGTACTTTTTTTTGTTTTTTGTTTTTTTTTTTTTTTGTTTTGTTTTCAAGACAGGATTTTTCTGTATAGCCCTGGCTGTCCTGGAACTCACATTGTGGACCAGGCTGACCACGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACCAACCAGCTAATCGTGAGATTTCTTTCTTTTTTCTTTTCTTTTCTTCTTTTTTTTTTTTTTTTTGTTGTTGTTGTTTTGTTTTTTGAGACAGGGTTCTCTGTGTATCCCTGGCTGTCCTTGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTTAGAAATTTGCCTGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGCATGTGCCACTACCAACCAGCTAATTGTGGGATTTCTTAAATCTTCCACACAG
Seq C2 exon
ATCCTCCAAAGGCACATGTGACATGTCACCACAGATCTGACGGTGATGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCTAACATCATCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAGCTTGTGGAGACCAGGCCTTCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTTGGGAAGGAGCAGAATTACACATGCCATGTGCACCATGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
-H2-gs10:NM_001143689:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: