MmuINT0075693 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:35520206-35521619:+
Coord C1 exon
chr17:35520206-35520321
Coord A exon
chr17:35520322-35520939
Coord C2 exon
chr17:35520940-35521619
Length
618 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GGGTCTTCATTTTTCTTTAGAGA
3' ss Score
6.58
Exon sequences
Seq C1 exon
AGCCTCCTCCATCCACTGTCTCCAACATGGCGAACGTAGCTGTTCTGGTTGTCCTTGGAGCTTGGCCATCATTGCAGCTGTGGTGGCTTTTGTGATGAAGAGAAGGAGACACACAG
Seq A exon
GTAGGAAAGGGCAGAGTCTGAGTTTTCTCTCAGCCTCCTTTAGAGTGTGCTCTGCTCATCAATGGGGAACACAGGCACACCCCACATTGCTACTGTCTGTAACTGTGTCTGCTCTCAGTTCTGGGAACTTCCTAGTGTCAAGCTCTTCCTTGAACTCTCACAGCTTTCCTTCTCACAGGTGGACAAGGAGGGGACTATGCTCTGGCTCCAGGTTAGTGTGGGGGACAGAGTTGTCCTGAGGTCATTGGAGTGAAGCTGGAGTTGTTGGGTGCTCTGGGAACCCATAATAGCTTCTCTGTTGTAATCCTCTGGTGGCCTGTGTCAGATCTTGCTATAGATATATCTTTGTATATATTTTTCCCTAGGCAGGGACAGCTCCCAGAGCTCTGATATGTTTCTCTCAAGATTGTAAAGGTGACATTCTATGGCCTGATTGCAGAGGGGCACTGTGGACATGGTTGTGTTTCAGGGACTCCCACAATCCCCTGTGAGTGGTGGGTTGTTGGGATATTGTCTTCATTGTGGTGGTTCCTGACCCTCATTCTCTATCATGAAGACAGCTGCCTGGAGTGGACTTAGTGACAGCCAGTGTGACCTTGGGTCTTCATTTTTCTTTAG
Seq C2 exon
AGAACAGCGCCTGATGTTCCCTGTGAGCCTATGGGCTCAATGTGAAGAATTGTGGAGCCCAGCCTTCGCCTACACACCAGGACCCTGTCTCTGCATTGCCCTGTGTTCCCTTCCACCGCCAACCTTCCGGGTCTGCAGTGGAAACTAAGGGTTCTTTGGAAAGTCGGTTGGATGGTGTTGTGCTGGGGCAAACACATGAAGGAGTGTTTCCTTAAAGTGGATACAGGTGTGAAAGGCTAAGGCCGACTCCTGAAGGAACATTTCACTGAAGCAGACACAGGAGAGAGGATGTTCTGTAAAACAAGCATGTGAAAGGATGCGATGCGTGATGAAGGATTCTTTGCTAAAGACACAATTATGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACAAGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGATATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAAAAAGAAAACTGACATATTAAAAAAAAAAAAAGACACACTT
VastDB Features
Vast-tools module Information
Secondary ID
-H2-gs10:NM_001143689:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCGAACGTAGCTGTTCTG
R:
TCCTTCAGGAGTCGGCCTTAG
Band lengths:
347-965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: