Special

MmuINT0078760 @ mm9

Intron Retention

Gene
ENSMUSG00000048763 | Hoxb3
Description
homeobox B3 [Source:MGI Symbol;Acc:MGI:96184]
Coordinates
chr11:96184440-96202465:+
Coord C1 exon
chr11:96184440-96184759
Coord A exon
chr11:96184760-96202377
Coord C2 exon
chr11:96202378-96202465
Length
17618 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
TTTTTTCCTTTGCCTTCAAGGAG
3' ss Score
8.26
Exon sequences
Seq C1 exon
AAGATTTCTATAGAGCTTAAAGTTCACAGCCATTCTGTGTAGACAAGAGCTAAGAAAAATGTGAGAATTATACAGAAAACCATTAATCACTTCTTTTCTTTAAATACGTATCCTCTCTCCTTTGTCATTATTCAACAGCAAATCTCCGCAGACCGGCTGTTGGGGGAAAAAAGTGTTAGCCGTCTCTCCGGATCGGCAAGGGGGAAAAATTTTGGAGCCATAAAGTTGAAAACTTTTTTCTCTCAGTTTTGGAAGAAGCCTTCCTTTCGTCATGAACGGGACCAGAGGAGCTCAGGCGAGAGCGGGCAAGAGGCTCAGAG
Seq A exon
GTAACAAAGCCCTGGCTTGGGCTGGCTTTTTCATTTTTTATTTTTTAATCATTTTATGGGCTCTTTTCACAAGTAAAAGAAAAAGAAAACCTCTCACCTCCTCTTTCTTTTTCAACTATCTTTGTGGGGTTTTATTTTATGGAGGATGCTTGGGCAGGTTTGCTACCTTTTATGATGACTGATGTTTGGGGAGAAAAGGAGAGACGTGGAGACAGAGGAGAGAGAGGCCTGGACACCTGGAGAGTGTTTGAACTGGTCAGGACGGAGGTGTCAGGGCTCCTGAAAAACACCAGAGAGGCTGTTTGTGAGGCTGTTCAGAAGTGTTTCTCTGGTTTTGAAAAATGCAGACAGGGAGAGCTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGTGTCCTGGGACTCCTGATTGTCTACACTGTTTACCAGTGAGATGTTGTCATTGAAGTCTCCTTTAAAAAAAAAAAAAGGAATCCAGTTCTTGACGGAGTCTCCTATCCTTGGAACTGATAGAAGTGGAATTGGTTGGGTTTTCTTCTTGTATCTAGTTTGGGATTCTAGATAAATCTTTACTCATTGAAAAAGAAACTGCTCAGGACCAGGTGCAGCAGAAATTCTCTTTTGTTCTACCCCCCACCCAATCCCATGCACCCCACACTCCAGGCCTCCTGGAGTCTCCCGTGTTCAGTTTCTTTTCTTTTTGCTTCTGGGTTGGGGGCTCTGTTCTTCCTCTGGGGGCCTTACTTCTCAGGCTGGGGAATTGGTGGACTCTGCATTAGACCTGAATGTGCTGTCCCCTTTTCCCTGAGGCCTCACTGAGAGAGAGTTTGGAGGCGGGAGGATGGCAGGAGGAAGAGTTCATGGAGAGGCCACGTTTTCTAGGCGATTAGCTTGGTATTAGAACCACAAAATGACCTCGGAAGCCCCTTGACCTCTCTGAGACTGGACATTGTGCTAGCTCTTGCTTCCTGCCCCAGAGGGAAAGTCACACCTCTTCAGGGTTCCTAGCTTCTTTATTCCCACTGTGGTCCCCAAATGCTTTGCTAGCTCAGAATTTATGTATCATTTTTCTATTGTTGTGGATTGGGAAGAAAGGTAGAGTTTTGTTTGTTTTGTTTTGTCTTTTTAAGTTAGCCCAGAAGTCCTGTGGGTAGGGAGTACTGGTGCTGATCTGTCTATATAAAGCTCCTTCCCTAGGTTTGGCTTCAGCCCCAGCCCCATCCCAACTCCATTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCCCTCTCTGTCTCTCCCTCTCTCTCTCTCTCTCCCCACCCCTCTGCCTCCTTTAAAGCGAGCTGAGGGAAGGAGAACTAAAGAATACAATACTGAGAGGTCAGACAGTCACCAGTCACAGATCAGAGGAATAAATTCCTGAGCTGGAGAGAAAGGCTTTCCACCATGGACACTATCTTGGAGATATTTCTTCATATTCTCTCCCCCCCCCCTCAACTATTTTCTGAAGTTCCTTTGTTTAGGGAGCTGTTTTTATAAACACCTTTATCTCCCGTACCCCAATCTTCCTTTTCTAAGTTCTTGTGTACCTCAATAAGCAGTAGAGTAAGAGAGCTGAAAGGAGGACCTCTCGCACGTTGCTCTGCGCGCGTTTTCCCTGCTAACCAAAGTTGGTAGAAACTTTTCAAGTCAAGAGATAAGTGGAAGACTTGCTAAAGGGGGGAAGCTGGAGTGAAGACCCCTTTTCTGTGACTGGCGCTCTATCTTCTGCATTCAATATCCTCAGTAGCAGCACACGTGGAAGGAAGGAGAGGGAAGGGAGGAGAAGCCTTTTCTTTCTAGTTGGGAAGAGGAACTGCTCTCCTTAAGAAAGGAAGAGGCTGTGCTTTGCTGGAGTGCGTGTGAGGCCTTCCTTGCTCACACTGTATAAATCTTTTCTGTAATTTGGGGAGTCTTGTCTCAGACAAGAAATAACAGGAGCCATTGGCTTTTTCTTTGTCCCCGGGTGGCATAAATGGAGGGACTGGGGTGGGGTGGGGGGTTCAGGAAGGGGTGGTCAGAGAGGCAAACTGGGACACTTTGATATTGTTGATAATGGCCAACTACTGCCCGTAAAGATACATAACGAACGGGCCGATTGTCCATCGCGGGGACCCTCTCTAGGTCCAAGTGACAAAGACCTAGTCACGTAGAACTTTTATAAGCTGTTTTGTGCGGTTAAAAAATCCCTGAGAATTAGGGGTTCACCAAAAGGAAGAAGGGTGACAATAGAAGGGAAAAGCTGGGGTCCCCCCAAACGTGTTCTTTCGCCTAGTCTCACCGCGGCGGAAGATCCTCCCCCCCTTTTCTCATTTCCAGACCTGAACCATTTTGGAGCTGGCGGCTGCCTGGGCTCTCCTTCCACATCTCTCGTGGCCACCCCCGAGTGAGGTCTTCCAATCTTTTGACCTCTCCCCCAGTTCCCTGGGCCCTTTGCACTCCCTCTCTTCTGTTGCTTGCCCGCCACCCTGGGCCGGAGGCTGCTTAGTCCCACTAGGGTCCTGGAGTCAGCCTGGTGGGTCTCCCTGGGAAGTGGTGAGACTACGGAGCGGTTTTGATTGGAAAACTGAGTTGGGAAGTTTCCCAGCGTGAGTTGAGCGCTGACGGATTTGTGATCGGCCATAAAACTGGAGCGTTCGGATTCGTAAATCAATCTCGCTTTCCTCAGTCTAAATGTTCGCTTTATCCGCAGCAAGAAAGCGCTCAGTTCGCGCTCAGGCGCTTGTTTATTTGAACATGGACATTTCCCAGGATCCGAAAAGAGTGTGCGTACTTTAGCAGAACCTGCCTGGCCTCTCCTTTCTGTAGCAGGGCTCTCCTTTTTCTTGTCCTTAAAAAATAATTTCATCGTTTTAAGGATTGCTATCTTCAGTTTTAAAGATTGCCATTTCTTCGTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCTTTCCTCTTCTCTCCTCTCCCTGCCCCTCCCCCCTTTCCCTCCATTTACCCCCACCTTGTTCGTCTTTGAAGGACAATTTTCCTTTTAATGGATTTGTAGCTAGGGACCTTGTAGACTGTGGCCTCGCAGGAGCCTGGAGCAGGCCTTCATCCTCATCAGGCTGAATTCAATACTAGTCTGTGTTCTGGATCTGGACAATCAAAGCTGACCACCCCCCCCCCCTACAGAGTCTGGGCCCCGCCGGCGCCCCCTCCCCGTGGGGCAGGGGCAGGCTTCCAGCACTTTCCGCAGGGGTCCTGCTGCCTCGAAACCTCCGAGGCACACGTAGGGAGGCTGTTTCTTTGGGGTGTGGTACAAGAAGAGGTCCTTAACCTTCATTGAGTCGCTTTTGGTTCAGACCCTTCTAAACAAACCAGAGGAGGCCCTTCTCCTCATTCCCCGGCTCCCCTACCCTATTGGCTTTATTCTTCTCCATTACACGGATGCCCTGTCGGCCTGGTCGCAGCTACCCCAGAGCTGCTGAGGTAGATAAGACTGGGAATGTGCAACGCGGGGCTTCTTAGGAATGCCTTTCTACTTCCCTTTGTATCCTCCCTCCCATCCCCCTGCCCCAGCTATGGACTAAGATTCATACTTATAACTTGTGGAGTTTGGGGTTTGTTTAGCTATGTTTATTCTTGAAAGGAAAGAGTCCGTATACCCCTCCCCCTCAGTCCACCTCCCGGCTTAGGGCATGGATTTCTCCTATCCTAATGTTTAACACTTTTGACACGTATCACCCCCATCTTTTCCTCATTGATCAGTCTCCATTGTCTGCTGATTGGAAGCTTAGGACACTAACACCTGGAAATATAGACCGCAGGCTGCCAGGCAGGCTTCAAGGCTTCTCTATCCGTTCTTGTCAGCTCTTGTTTCACCACTTCAGGTACCGTCATTGGTGGTTTTCAAAGACTGGGATGGGATGGGCATAGGTAGAGTCCCGCTATCCACTTCTTTTGTATGGAATCTTTGGTCCCTAGGTCTTTGTCTCTGGAGCTTATTATCAAATCAGTAGCAGCATTTGGCTCCTTAGGAGAGTAACAATGCTAAGGGGAAAAGTCCCCCTCCTGATTATTCTCAATCCTGGGAGATCCAGTCATCCCTTCACTATGTTTGCCCCTGACCTTTCAAAGGCACAACACAAAAGATCAGAAAGTGAATTAAAGCAGGAAGAAGTCCCACTCTTGATATGTACAAGGTAGCAAGGACTTGCATGGAGTCTTCCTTTCCCTGTCTGCTTCCCTTAGATACACTGTTGATGAGTTTGAAGGGAGTGGGGTCCTGCTAAAATAAATACCCTGTAGTGTGGGACAGACTGGAGTTGGAACTGGCATTTCAATTCTAAAGGATACAAATAGGAAGAGAGAAAACCAGGGGCTTGCAGAAGGGCTCAATGCCCACCCCACCCCCACCCTGTCGCCCCTGCAGACGTTTCTGCACCTCTAGGAACTAGGCAGAAGCAGGAGGCGAAGGGAGAGAGGAGAGGTGGGCTGTGGGTAAGTGTGCGCCTGTGGGGGTAGGGAGCTATAAGCAGAGTACGTATAGATGTGCCTGTGGGAGAGAGACCTTGCTACTATTCCATTGGTGCATTTGGGGGGGGACCTATTTTACAGGAAAATTTCTCCTCCTGAAGGGGAAGGTCATAGTGGTCCTTTGAGCCTGAAATCGAAAGACCCCCTTCCCCCTCCTGGTCACGTGATTCATTAAATAATTAATGCCTAGGTTGCAGAATAGATATGTATTCGTCAGGAAAATCGCAGGCTCGGTCTCCCTGTTTCTGACGTCCAATTCAACTGTCCTTTGAAAAACAAGCCTGTACCCTGAGAAAAAAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAAAGAAAGGGAGGCATCAGTAAAAGATCCCCACAGCTGGAACCACACCGCGGGCTGGGGTACTGTAAGTAGAAGGGATTTCTCACTACCTACCGCGCCTTATATGTCCATGTAAATTTATTGTTTGTTATTAATGTTATTGTCGTAAAATGTGACAAATAGCCATCTTCATTTCCTGCCATTTCTCTTCACAGGGTGCTCTGTGTTCATACCCATTGAGGCATTGCATAGAGATTTTAGGAATATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCAACCTTTTTCTTGATTTATAGCAATATGGGTGTCAGCTTCTCAGCCGGCATGCCAACCATTGTGTGTGTGTGTGTGCATGTGCACGCGAGCGTCCGCATGTGTTTGTGAGTGAGTTGTGTTGTTTATGGCCATGTCTTCGATAAATCATTTCTCACAGAAAATGATGTAGAAGCTGGGCTGGTTCTGTGGCCGAGGAGAGAGAGACGCTTTGGGAGGCACTTCCCCCTCTCTGCTCTGCTCCCAGGAGTTGGGTTATTTCAGACAATTTACAGTAATACATCAGCAGCTAATATGAAAGCTCTATAGCTGGAGGTCCTAAATTACAGCATCTGTGATTATCAATTAAGATGAGATTTGTATAACTTTGGTAAACTAGAAGTGCCTCGTTGGCATATAAACCCAGTCAAAGATCATGACCTAATAGAAAAATGATATTTGCAAGCTCCATAGAGCCAACATTCCAGCGGCAAGTAATGCTGTGTTCTGCGGCAGTTCCTCCTAGGAGTTTGGCATTTCCACCTCCAGCCCTGGGTGAACAAACCCAATTCTGAAGGCAAAAGGTGGGGTGTGTGTGAAAGAAAAAAAAAAGGGTGGAAGCATTGGAAGAAATTACAGGACTTTAAGGCACTGATTTTTGTAGTCAGTGGAGACCCAACAGAAATGTTATGCAACTGATAAGGGGACAGGGGGAATCTATTAGAGCAGTAAAGCTGCACTTAAAGGTTTGGTGGGTATTGAGGGTGGAGAAGGAGCTACCTAACTTGGGGGAGACAATGGAGGCTGGAAAAAGGGTGAAGGGCAGGGAGAGAAGCTGGAAGCCCTGGCTCCCCACCCTCTAGGCTACAAAACAAGGAAATGAATTCACACCCCAGGAGCCTTCCTTCGACCTATTGAAACAAAGAAAGTTTCTTGGGCAGTGAGAGTCAGTCTCTGTCTCTCCCTGTCTGTCTCTCTCCCTCTCTCCCCCTGTCTCTCTTTTTCTCACTTTCTTTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGGGGGCTAAAGTGGGAGAGGCTCTCTTAAATCATTCTAGAAAAGAAATGTTTTAGGAGCCAAGTGGCCCTGGAAAGTTGAAGAGTGTTCTAGAATGTTGGATGTATTTCTTTGCCTTATCTTCAGCCAAAGACTGAGCAGTTGGGGTGCAGATCAGGAGTGGGAGATCTGATAACTTCCCCCTGGTGCTTCATGTAGAGAAGAGGTTGCTGGCCAAAAGCAAAGTCAGATGTGGCTTCTTGGGGACCTCCTGTCCTATGCCCCAAACTTGTGATGGATGAGAGGCAGAGAACCAGAGCCTTGCCAAGTCCACACTGTGGGCTGCTCCTCTCCTGGCTGGAGTCAGGCTAGTTGACTTTATAGCCACTATTATCTGTGATATTTAACTTTGCCTGCTAGTGTAAACCTTTGAGCAGAAGAATTAGAGTGATGCTGTACAGGTGTTAAATTACCCATGGCATCAGCCCCATGGAGTGGCAACACAGGCCCCAGCCCAGGCAGCATCCAGGAGTTTATGCTACACTCTGCTCCAAGTCACAGCTGAGCCCTAGCCTCTCCTGGTTAACAGGGGATTTGAGGGCCATCGTAGAAGCCTCTCAATGGGATTCTGGGTTGAAAGAGATCTGAAGAGACAGAAAGGGGCACCCACTGTCTGATCTGCATAAAAGGAACTGGGCAGGGTCTGGATTCAGGACAACTGTGGGGAGGGAGCCTGGTTGGGGGAAGCTGGTGCCTTTCAGTCTGGTCTCCATCCGTGTCAGGGAACCCCTGTGTGAGAGGTGAGCTGTTTTACTTCTCACCTGGTGAGTGTTTTCTTTCACATGTTCCTGTGTAAAGGTGAAGAAGCCGATGTTCATTCTCACTTGGTGCCCCAGAATGTAGGCCAAAATCTTGGGATCTCTAAGCAAGAGGCCAAGATCCATCTCTTGCACTTCGGAGCAAGAGTAAGAAGGAGGGAGGTAGACCTGTGCTAGCTTCTGCATTCAGCGTGTTTCAGAGGATAAAGAAGGAGAGTGTGGAACCTGAAGGAACGGTCTAGTCTGGGGAGCTGGGTCATAGCTAACTGGAGGTTGCTAGCAGTTGGACTCAGGGGCCACTACCTCCATTTCCAGATTCTTCATTTCTATTGACCTCTCACTTTTCCCCTTGTCACCTTTCCCTGGGAGATCTGCCCCACCCCCTGGTATTTCCTTCTCCCTTAGGACTTGCCTTTGTCTCTTCTGGCCCTGGGGAAATGAGGAGGTGTGGATACACCTCCCCTCCCCTCTCCCACAACTCTCATACAGACTTCCCCAGGAGACAAAGCAAGGAGAGCATCATCCCTTGTCACTATTGTCATTCAGTCATCAGCCCCTCTTGAATCCCCTTGTTTGAGGCCTGGTGCATCCATCTAGGTATCCAGTAGGCTTTTCCCCAAATCAGCAAGTTTGTGAAGACTGGAATATATATATTATACATATATATAATATATGTGTGTATACATAAATGTACATAAACATATTTTTCCATATATCTATATATGCATTTGTTTCAGTTAGCCTTGAGGCCTTGAAGCCCCCTGCCTCTTATATCTTTAACCCCCACCCTTGGATCTAGGGATGGAGTAACATATTTGGTGGATGGGACTCTAGGAAAGTTGCTGATCTGGTCCCTCCCACCCCCAACTGTAGTATCTATCACTGTGCCCTTAAGATGCCAGGATGCTGGGCTGCTAATGCTTTGATGACCAGATGAGTTGGATGGAAAGATGAGTGAGAGAATAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGGGAAGAACAGCAGGCTCCCTTTGGGGTGGAAAGTCAAGGCTGAGCTCAAGGGCAGGCAGGGTCTTAGGGCGAGAGGAGAGGAAACAAAGGCCAGTCTTAGGGAAAGAGAGTTTGTTCTGGAAGGACACACAACACAGTTAAAGGCAGAAGTAGGAAAGGAGGCTGCTCATTTTATTTCCCTTCTCCCCAGAAAAGACTCTCTCAGAGACAGGGTGTAGATTTCCCCCACAGAGGAAAGGCTCCAAAGGAGAGGAGAGGCAGCCTAAGGAGCTCACCCAGCCCAGAAGTGACTCCTGGAGACACTCAGAAGTACTGCCTGAGGTGCCTGAGGTGCCTGCCACTCGGATTCTCTTAAGGAGCTGAGAGAGGAAGGGCGTAAGGCGACAGAGGGCCTGTGAGAAAGGGATAGAGACAACAGAGGTGGCTGAGGGGTTGGGGGGAGTCTATACCCGTCGGAGGGCCAACTCCTTCAGACTCTATAAGCCATTCTCCAACCCCACTATGCGAAGCTTTCTGTACAGGAAGTGGCCTGAGCTGAGACCTTCTTAGAAACTACTGCCTATGGAGTAAGCTCCTGGAAGGCCCTAGTCAGGTGTGAAGCATCCCGGGGACAATTTGGTATGCCAGGGGAAGGCCAAGAAAGATGTCCCGGGCACGCTAGTCTCCTCTTGCACTGGAACAGTAATCAGGGCTCTTTCCCAAACAAACGCCATCACGGCAGGGAGACTGGAACAAGACTCTGAAACCTAGAGGGGAGGATCCTCCTTCCTCAGCTCCCCCTTTGAACTCTCTTTCGAAACGGAGGAGGAGTTAGTTTTACAAGAACTTTCACCTCCACACTTCTTGCCTTAACCCTTCAGTTTAACAAACGGATGCTTCCCTTTCAGATCCCCTCCCCCTTTCATCTTTCAGGAAAGAAAAGAATAAAAGGGAACCTAAGCAACTTTAAAAGGTCTGCAGGGGAAGTTGGGGAAGGAGGAGAAAAAGAAAGAAAGCAATCCTTTTGGGCCCTCCAGTTCTTCCCATTACCTCTGTTACCCAAGCTCTCCCTCCTTCACAGTACCCCCCACCCCCTCCTGCCCTGCCCTGGACCGTCTCCTATTCCCTCCCTTCTCCTTCGGGCCCGGACATATGGAACCCATTTCGCTGGTGACATTGAAGAGCCGCTGGTGCGCCCGCCTTCCGCCATGGCGCCCCCGAGGCCCCCGCGCTTCTCCGTGGCCCTGCCAGTCGCCACTTCTTTCGCCCGGCGACTCGGTCACCTCTCAGACCGGGTCCCACACCAACCTGGGTTTCTCGTAGCCCGGCGCCGGCCTTGGTGGGACCGCGGGCTCGCCCTACTCGGAGCATCCCTAGCAGGAGCTGTGCGGCCGGCTCCGCAGGCTGAACAAAGCCGGGGGCGGGGGCGAGGCGCAGGCCGGCCTCTTTCTCCCTCACCCCCCCAACCCCCAGCACTGCGGGGGTGCTCCCGGGGCCAAGGGACCAGGATGTGGCCGGCCCAGGCGCATCCCCAGCCCGGGCCGAGGGTCCCAGGACCGGCCATCAGCTCTCACGCGTTCCCCGCACCCGGCCGTCCGCCGCGGCTCGCACCCTAGTCTGAGACCGCACAGGTAAGTGTGCGGTGCTCAGTCCAGCGCCCCGCGACCCAGTGAATGTGGAGAGAGGGTCGCGGATACCCTCACTCCCCACGTTGGCATCTGAATGCTAGACAAAGATCAGAACTTAGAGGAGGGGGTGTGGGACTGAGATTGGGGTTCGGGGCCCTGGGTTGTAGGGCGAGTGTGGAAGAATGTGGAGCTGTACCTGTGGGTAGACAAGATCCGATCAGGGTTTGGGGAGCTCTGGGATTCAGGAAGGATGGAGACTTTTTCTGGGGGGAGATGGGAGCTGTTGGGGTGAGGGAAACCTGAGGCTGGCCTGGCTCACACAACCCAGCTGCCACTGTGGGTCAGCCCTTTAGCACCTACGAGTTATTTGAAGCTGAAATGACAAGAGGTTACGCGGAGGCTGGGTGTTAAGCTGAGAAGGTAGGAGAGGGCTTGATTTATGGCTTTCAGAGAAGCTGTGTTTACTATCTGCCTGCTCTGGAAACCAAAAACCAAACAGAGTAGAGGCGGGGAGAAGCCTGCCTTCCTTGGAGTGGGAGGCGATGCTAGGCTGCTGGGATTTATTTTCTCCGATACGAGAAGACCCCAGGAATCATCTCTTCACAGGCGAAGGGTGTGGTGCTTTTGTGAGGCAGAAGGAGTGTGCAGGCACGCAAATGTGGAGATTGTGTATTGTGGGAGTGAGCCTAAACACTGGGCGTGTATGCATGTGCTCTGATTGGCGTTGCAGTTACATAGAATCAATTCCTGAGTGCATATAAAGAGCCAGGAGTGGGACTGGGGGGGGGGTCCTCTGGTCCTGGTACTTTGGAACAGGGTAGCTTTGGGTACTATTCACTGTCTCTTTATGCTGTCTGTGAGGTACTGTTTCTCCTGCCTGGCCTTTCTTTCTTCTAAAAAGTCACAGGCAGCAAAGCCAGCTTGTCCAGGCCTCTGGCCACAGCTCCTCTTTCCCTCTCAGTATTTACTGCCTGCTCACGCCCACGCTGGCTGATCTTCACTTTGGATCTGTAACTTTGTAGTGGGATGCTAAGAATAGGGTGAAGTGGGGGAAGGGGGAGATGTGGTATGGCAAGGGAAATGGGGGAGATTGAAGTCTGGTCTTGGAAGGGCTGGGTCCTACCATTGCTACTCAAATTCTCCCAGTCTCTGTTGAGAGGTGGTGTTAAATAAACACACAGTTGACCACAAATAAGGGAAACGTGCAGAATGTTGAAGGTGGCAAGAACACATTTGGACCCCTAGATAGTTATTTCCGCAGGCCAACTAGTGGCTCGTGTGTTTCTGTCCAGACACTGGCTTTGCCTGCAAATTGTTTTGCATTAAATTTTCTCAGCCACAGAATTATCTTTCCTCGCCTCCAGCTAAACTTGCATTTTTCCACCAGACACTTGGGCCCGAACCAATGAAATCTGAGAGGAAGCGGCTGGGCCCTAAGTGGCCGTAATTTAATTGATTTTATCATAAATCATCAACTTGATGAAGAACCCGAGGTTTCAGTGAAGTAAATTGATATTAATGGGAGTTTCTTGAAATGCAAACCCACTGCATTGTTGGGGCATCTTGAGCTGAGAAGGTAGATTGCGTGTTTCTCAAGAGCCGAGAGCTCAACCTGGCGCTCAGTGCAGCCTGGGGTGGGTGTGTAGGAAATGATACTTGGAGGGACAGCTGCTTGCAGATGGATCTCTGGGGGACACTGCAGAGAAAGGAACTTGGTTGGGATGGGAGCAGACTCTGACTCTGAGGATACCCCCCACTCCCACCCCTACACACACACACACACACACACACACACACACACACATTGGCTATCCTGGAAATGCTGGTTGTCAACTGAGGGATCGGAGAGGAGAGGGCAACTTTGGAAACTGGTAGGTGTGTGGGCAGAGGTGGGGGGGGGGTTGGGGTGAGAAGGCCAGGCTGGTACAATGGGCTTATTGATGCCTGGTTAAAAATTGCTAGGTTGAAGCCTTCCTCTTCTAATTATACAAATTAATTATTTACTACTCAGACTGCTGCATCCATCCAAAAATAGCACTTTTGATTTTGTAAAAAGCGTAGAAAACAACCCATCCTCCACTCAGAAGAGGAGCAGTGAGGCCCACTGTTTCTGTGGGGCGAGAGAGGACCCAGACCAGGATGTGTGCTCAGTGGTAGCTGAGGAAACATGTAATTCCCAAGAGGAAGTATTTTGCATCTGATAATAATGGCACTGGTGCACTTATCATCTGAACTCAGTTTATTATTGTTTGCCGTTACTCACATTTACATTAGGATATAGATAATTACTAATATTCAGCCTGAAAGGGGACCTTGGAGATCATTTATTTAGTCTGCTCCTTCACCTTCATACAAACAGCTTGGTTTTAAAGAGGGGCTCACTGAGGCCCAAAGAATGCTCAACTTCGAGTCACACAGCCAAGCTGCCATGATTAAAGGCTCAAGCCTGTAGCAGGCATAGCTTAAGATCAATTTATTTTCCACTGTGGCCCTCAGTTTCCCTCTCTGCTACAATAGCAGAGTTGGACTAGACACTTCAAGTTCTCCCCCATTCTGCTCTTGGGTGCCCCTCAGCATCTCTTCGTCTGTGGGATACTGCTTGGGGGGTAACTTCCTGTGTATCTGGCAGTTCTGTGGCTATTTGACTGTAGAAGTTATTGCATGATTTGTTTGCAAAATTCGGAGTTTGTCTCTGCCTGTACCTCTAGAAATTAAGTCCTCTGGACTATGTGTTTTGAAGGAATCCCTGTTCTCAACAGAATGGACACCCAGGTCAAGAGCAATGACAATAGAGGCCTAGCTAGATGGGGTGAGCCAGGATTGGCACAGGGCCTTAGCTTCACCAGACAAGCCTCTTTCCCTGTTAAGATGCTAAGTCAGGGCTGGAGTTGTCCAGAAGCAAGCATCTGAGGTTCCTCTTACCTTAGGCCAAGACCTGGATGTGGGATCACAGTTTAGAATCTGTGGAAGCAGGCGCAGCTTCACCACAGACTCAGCCTTGATCCTGGACAGTTAGACCTTCTTTATCTGGGAGAAGGCAGGACGTACACAGCGTGCCATAGCACCATACTGTCTGTCCTTCCAGGGTAACTAGAACTGAGGCCAGCAAAATGGAAGGTCCCTACTTTGTTTCACTCTGTTTCCTTTTTCTTCTTCCAACTACAGAGACACGAAACTAGAAGGCAATGGCTTCCCAGATGCACAGCTATGTGAAGGGCAATTTCTTTTGGGATCAGGGGTAGAAGGAGGGTAATGGGTTTCTGGGAATTTTTGGATGCCCAGGAAAAATATGGCTTGGTGATTCTGAGGCAGGAAGTGGAGACAGCGAAGTAACTTCAATTTTAGAAATCCCAGGCTCTGGTCAGACAGTCCAATCCTCCAAACCTATTTTGAGAGAGAAAGTTATTGTGGGTGGGGTGGGGGAAAGACTGGCAGACCCAGACTCTGGTCCTATCCCATTCTGACTTTGGAGTTTTATATTTGGAGGCCTTCCACTGATTGGCTATTAATCCAGTGAGTTATTGTCTACTAAACAAAGGTCATTGGGAGAGAGACGTCCAATCAGTCAGGAGAGACTCTGCCTGCAGGCCACTCAAAGTGGACTGTGCCCTTCCCTTCAGCCAGCCGGTCTTTGCCACTATCTCCCACCTTCCCCTAGCTTACTCCTCCAGCTGCCCAGGACTTACAGTCTCTCCCACCCCACTCCCCTCTGCCTCTCCATCCTGGCTACCTTTGTCTCCACACTGATAGGGGTGGGGTTTTCCAGGACTAAATTAGATGTCCCTGATTTAGAAACGGATCTTTCTTGACCAAAGAGCCTGCCTGCAGCTAATTGTGGTCCCCTTAGTATTAGTTTAAGGGGTCTTCCACTGGCACCCAGGAGACTTTATAGATCCATGTGGTGTTCTTTCTTTCTTACTCATTCCTAGTCTGAGGCGGGGTGGGATAGAGCCTGGATTTTCTTTTCTTTGCTCATTGGGTCAGGCTTTCTCCCACCCCCTCCCCTCCGAGTTATCATCAGCTGCGTCTACACTGGCCTTGGGGAAAGCGCTCAGATCTCCTTCCCATGTTTCTTTGTTCCTTCCCACTCGAGCATTTTGAGAGAGTCAGGGACAAGGGAAACACATGTCTACTCTACAAAGCCATCTTCATTAACAACACCTTCCTCCTTCCTCCGTTTACAAACCTAAAGCTTTAAAATCTTCATTAATATTTAAGAGGAGATGGAGATTAGCTTCAACTTTAAAGTATTCACAAAGTTGGACTGGACCGCCAAGCTAGAAAAGAGCATGGGACAGGGAACGGGGACAAGGGCAAGCAAGAAGCAAATTGCTAAATTGTAGCCGCAGCTCCAGCAGGGCCAGAGGAGTTTCCTGCTTGCCTGAGATCAGAATGGGATCCCTGGTCACCAGAAGACTGAGGACAGAAGTTGGTTTTAAAGAAGCCAGCAGTGTTTTCCCTTATTGAGATAATTTTTTTGTTCTTTGTGGAATTTCTTTGTGGGGTGGGTAAGGATGATCATACTGAGATTCACAAGGGTGGCAGTCATCAGGTCCCCGCCACTCAAAGATTGCTTACAAAACTCCTACTCTCCCGATGCTGAGTACCTAGCAGCAGTTGTGGAAGAGAGTGCAGAGCTACTACCCTGTCTCTACAAAGACAGAAAGGATGCTTGTGAAGAGGGATGCTCTCTCCCATTTTTTTTTCTTTTTACACAGATAAGTTTTTGCCTCTATCAGCACACACTGGCTGTTTGTCTCATTCTCTGCACTTTCCCTCTTCTTGCCCTTCCACCTTCCCACAAAGTTACCAAGTTCTCTGAATCCCAGAGAAAGCTGTTTCCCATTTGCCCATCTCAAACTACCCCTAAATCATGGCGTCTAGTCTATCCCCCTGTCTCTTGTCAGTCCACAGAGGCTATCTTCAGATCCTTCGGGAAGTCCTCTGCCCCAAGCTCCTCACTCCAGCTCTGGCATCCAGCCTTTGTTCTCTTCAATTTACAAAGACTCTTAAGCCACTACCACCTTTCTGAACAGAACAAACCCTCTCAGCACCCATAGATGCCTCTGTCCCTCTGTCACCTCCCAGCTTCATGTCGGGCCGCTCCCTGTGGCCCCGGGGACAGGGGAAAGATAAAGAAACCAAACAAGTATCTTGGATTCAACTTCTACCACATTCAGAGGTGCATCTCCTCTAAAATTTTTTCCCTGGCTCCTAGATTGCCCTTTTGTTCCCATCCCTGGATGCCCTTCTTTCTGGGACCACCAGGGGTGAAGAAGGCTTGGAAAGAGAGGGTTTTTTTTTCTTCCTCCATACTCTTTCCCACCACCCCAGTGCAATCAGTGCAATCCAGGCCACTGTTGTTGCCGGCAGCATTGGCTAGGTGACACGTAGGCTCTTTTGTTATCCCTTTAGGCAGAGCTGTGCAGTCCCAAAGGTGACCAGGTTTCTTCTCAATTCCACAGCAACCATCCCTAGCCAGTGGTGATAGCTTTTAGAGGAGTTGAAGAGTCTGAAGTACATTAAAAAAAAAAATCTCTTTATTTATGGGAAGTAGAGGAGATCGTCTGTGATTTAAATTTCCTGAAGTCTCTGGAAGTTTCCCTGGCCTGAGCTGCTGACCCACCAGACCTCAGGTTCTTTGGCATCTAACCCTGTAGATCTCATATCACAGTTGCTGGACAAGTACTCAGAGGCTCTTGGCTTGAGCCCCAATACTTCATTAATATTTTTCTTGATACTACTAATAAACACAGCAAATTGACTCCGGCTTGCTTTCTCTACTTACCCTCTCAACTCCCACCTTCCTCAAGCCACCAGCTCTGGGGAGGCAGTAGGATCCCAGGTATCCCATCTAGGGCTCTGCATGTGACTCCTGTTGCTGAAGGGTAGAGAAAGACCACAGGTTCCTTCTGTATAACAGGGCCCCAGAGAAAGCAGTTGCTCCAGCCCATTTGGCCTGATTTGTTGGGCTTAGAGACAGTGGGGCCCTAAGCCAAGGGTTGATTGACCCTTTACCACCCCTAAAGAAGAGCCTTGAGGGAGGAGGGAGGTAAGAGAGCTATTGCTCATGAGAGACCATGGCATCCTTTCTGGAAGGGAGACAATAGCTGGTGCTCTCTCACCTTTGTTTCCTGTCCCATGCCTGTCCTGGTGTATCCAGATGGGAGAAGGTAAAGAACAAGTGCCCTAATCAGAAAAGCACAGGCTCCTGGCGGGGATCTGTCTTTACAAAGTTAAGAGAACCAGTTTCCGTGTAGAAAAAAACAGTTTCCGTGTAGAAAAAGAGATACCGGCTGCCTTCTGTGTCATCCCCCTAAGTCAGCAGTTAGGCAGCAGGCAGGCACTCCAGCCTGTAGAAATGGCCTGGGCTCTTTTTGTCTTCTTGCCTCTACTGCCAATGGCTCTTTCCCCACCCCCTGGCCCAAATTTGCAGACACCTACATTCTTGGCTCCTGTCTTCCTCCTACAGGCCTCCTACTTGCTTTTGCCTGCCCTGTTCAAACACACTCTAAGAAAACTTTCAGCTTTTGTAGCTCCTTCACTTGGGCCAAGAGTCATGAGTCTTGCCGAGCAGAGCACGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGGAGAGACAGATTGGATCTGAGTAGTGATGGTCATCCTCCTGTCTGCCAGTACATTCAAAATGAAGCCGGTCTGGAGTTCTCATCTTCTCCCGGAATACAAATGTCCTTTTCACCCCTTAGCCCCTTCTGCCCGTCCTGAGGTGAGAATCTTAACAGAAAGGACCCATTGAAGTTCCTAGAGCCCTTCTCCTGACCGGCTGTCTGGAGCTCTGGTAAAACCACAGGGTCCTTCCTTCTGTCACCCTCTCTCCAACCCCACTCCCCCTGCAAGATGTTCTGGGTTTTTTAATCATCCCTCACCGCTAGTTGTCTGTTCTCAAAAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAAAGTCTGGCTTTGTCCCCCCTCCCCCATTAGAGACTAGGGGATAGGGGGTGGGGAGGAGAGAAGAATCAGGGACTGAGATCAGGGACTCAACCACCAGGAGTGTCTACCTTAAAAAAAAAAGAAGACGTCTCCGTGGGCCTCCTGTGAGTGAGCAGGAGAGACACCCAGCACCCCTGGCCCAGTCAAGCCAGCTTCTGGCTAGGTCTCCAGAGGCCATTTCTCGAATTAGCATAATGGTCCAATGGGGGGGGGTCCTGAATACGGTGGGGGCACTATGTAAACTCCACCAGCTTTCTTTGCATTTTGCTGTTCTCTTCTTCCCCATCTCAATGTAAAAAATTTTCCTGTTTAAAAAAACAAAACAAGACAAGAACACCTTCTACTTTCTTTGCTTCACACTGTTATTTGGGGGGGGCGCCCCCCATCTCTCATCACCACAATCACCTTCCCTCCTTATCAGGCATCTATGCTGGCTAAAGGGGAGACGTGGGGGGGGGGGCGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTTTTTCCCTGTGCAAAAGCAGAGGCCATTGTTACGGAGAGTAGGGCGTACCAGTCTTATAGGGCAACCACACTGTGGCGGCTTGGCCGAGCTGGAGCCCGGAGCCGGATTCTCGGCGAGCCGAGCCGCCCAGCACCTTTCGGTCTGCTATTTTCTCCCCCCCGCTCCCCTACCCCTCCCTCCTGCGCACCCCCCGCTCTAAAGCCGAGTGAATTGAAGCGGACGCCGCGCGGCTCCTCTGGCCGGTCTGCCCCTCGGGCTCCCTAGCCGGGGTGGCTTTGGGGAGGGGGGGGGGCGACGCAGCTTTAAACAGTGGTCTTTTTTTCCTTTGCCTTCAAG
Seq C2 exon
GAGGGGAGATTTCTCGCCTGCCGCTCGCGCTGGGGCTCGATGTGAATATATATTATGTCTGCCTGTTCTCCCCTCGTCGGTGGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048763-Hoxb3:NM_001079869:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NA

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:46632981-46651198 
ALTERNATIVE
HsaINT0077291
(HOXB3)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:38579992-38580457 
Chicken
(galGal4)
chr27:3626424-3638870 
Chicken
(galGal3)
chrUn_random:371068-372833 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"