MmuINT0082298 @ mm9
Intron Retention
Gene
ENSMUSG00000026925 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:MGI Symbol;Acc:MGI:1927753]
Coordinates
chr2:26254933-26255663:-
Coord C1 exon
chr2:26255556-26255663
Coord A exon
chr2:26255095-26255555
Coord C2 exon
chr2:26254933-26255094
Length
461 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTCTTTTACCACGTGCCCAGGGG
3' ss Score
6.17
Exon sequences
Seq C1 exon
CTGGAGATGGGAAGGTAGCAGAGCGGCTACTGGACTACAGCAGAACCATCCAAGCCCTAGCCCTGCCCCGGAATGTGCCAGACACAAATCCCTACCGCTCTAGTGCAG
Seq A exon
GTGAGGGCTACAGCTGCACAAGACACTCTCCAGCAATGTGACTGTTGGAGGGCTTAGGAGATTCATGGAGTCCTCAAGACTGAAATAGCCACTGGGTTTGCAGCAGGGCAGATGGGAGCTCACAAGGTCCAGTGGCTTGGCTTGTCCTCAAGTCCTCCGTGCCAACCACTTCCTGGCCCTTACTGAGCTGTGAGAAGCTGATAGATGGCTAGGCCTGCTCTGTGTATCGAAGTTGGCCTTTGCACCTAGACTGCAGAGAGCTTCCCATCCGCTGCAGTTGTTGACCTTGGCTGCTCCTATCACTGTCTCCTGGGGGGGAGCTGCTACCCAGCTGCGATTCTGTCTGGAAGGGGACGCAAACAAGGGAGGCCCTATCCTGTCCTAGAGCCCATCCATTTGTCTGCAAATCAGAGCAGATGAGGGGAGGCCAGCACCAATGTATTCTTTTACCACGTGCCCAG
Seq C2 exon
GGGATGTCACTACCCGGTTTGATGAGGTCTTCTGGTTTGGGGACTTCAACTTCCGCCTGAGTGGTGGACGAGTGGCTGTGGAGGCCTTCCTGAAGCAGAAACCTGAGGTGGATGTGCTGGCTCTCCTCCAACACGACCAGCTCACCCGGGAGATGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026925-Inpp5e:NM_033134:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(12.8=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=PU(17.9=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGATGGGAAGGTAGCAGA
R:
CTTTCTTCATCTCCCGGGTGA
Band lengths:
270-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: