MmuINT0084109 @ mm10
Intron Retention
Gene
ENSMUSG00000000157 | Itgb2l
Description
integrin beta 2-like [Source:MGI Symbol;Acc:MGI:1277979]
Coordinates
chr16:96424903-96426268:-
Coord C1 exon
chr16:96426049-96426268
Coord A exon
chr16:96425097-96426048
Coord C2 exon
chr16:96424903-96425096
Length
952 bp
Sequences
Splice sites
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
3' ss Seq
AATTCCCATTTTCTCCTCAGCTC
3' ss Score
7.5
Exon sequences
Seq C1 exon
AAAGAGGCCACTGCTCCTGTGGCCGATGCTTTTGTCGTTACGGCTTCGTGGGCTCAGCCTGCCAGTGCCGGATGTCCACTTCAGGCTGTCTGAACAACAGGATGGTGGAGTGCAGTGGCCATGGTCGATGCTACTGTAACAGATGCCTCTGTGACCCGGGCTACCAGCCACCACTGTGTGAGAAGCGTCCTGGCTATTTCCATCGCTGCTCCGAGTACTA
Seq A exon
GTGAGTGTCCCTACAACCCATACTGGCCTCACTGCCAGGCTACCTTGGAATTCCCAGGGACATCATCACACCATAGTTTTCAGCAAGATTCAGCAGACTCAGCAGGGAGGCCTTATTTTGAGGGGAGTCTTACTTCCCTTGGGCCTTTGGATCCAGTCTCAACTGGCTCTGCCCTTCGTCCACTCCCAGGACCACTGTCTGTTTCCACCCTTGCTTGCCCTGCTCTGATGGCCTCTCAGGGTGCCTAGGACTCTCATTACAGGATCAATTTGTATGTGGAAATCCTCACATATTTCATGCTGTGGATCTTGACAACCCCATGTACCCTGAGACACCTGTTCACCCTTGCACACCTGCACCCTTTAATCATTAAGGCAGCATGACATGCCAGTTTACACTCACACACTATGCACCTTGACACACCTGTGAAGTCTTGCACACCAGTGCATACTGATCCAACAGTGCACCCTAACATATAAGTACACACATAGCCTTACACATCAATACAACTTATTCACTAGTGCACCCAGACACACCAGTATGTACTCACATAACATGAACCTTGACAAATTCACACAGCCTTGCTCATCTGTTCACCCTGGTTCACCAGTGTACCCTAACATACAAGTATACATTCACACAGCATACACCCTGACACATACACATCCTTACACACCAATACACACTTAGTCACCAGTGCACTCTCACACAGCAGCATGCACTCATGCATCATTCACCCTAACACACCCATGCAGCCTGACACGTATGTAGTCTTGCACACCTGTGCATCCTGACACACTCATGCATCTTTGCATAGTGCTGAGACCCCAACACACCTGCGTGTCCTCACACACCTGTGCACCTTGCCCATTCATGTGGCATTTGTCTCATGCTCTTGAGCCCCCCCCCTTACCACCTCATTCCATCAAACTAATTCCCATTTTCTCCTCAG
Seq C2 exon
CTCCTGTGCCAGGTGCTTGAAAGACAACAGTGCAATAAAATGCAGAGAGTGTTGGAATCTGCTGTTTTCCAACACCCCCTTCAGTAACAAGACCTGCATGACTGAACGGGACTCAGAGGGCTGTTGGACAACCTACACTCTATATCAGCCAGACCAGAGTGACATCAATTCCATCTACATAAAGGAGAGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000157:ENSMUST00000000161:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=41.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTGTCGTTACGGCTTCG
R:
TGTCACTCTGGTCTGGCTGAT
Band lengths:
357-1309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types