MmuINT0084151 @ mm9
Intron Retention
Gene
ENSMUSG00000020758 | Itgb4
Description
integrin beta 4 [Source:MGI Symbol;Acc:MGI:96613]
Coordinates
chr11:115850204-115851155:+
Coord C1 exon
chr11:115850204-115850333
Coord A exon
chr11:115850334-115851035
Coord C2 exon
chr11:115851036-115851155
Length
702 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
ACAGTCTGTGGATTTAGCAGAAG
3' ss Score
1.61
Exon sequences
Seq C1 exon
ATACGCCTGGGTCTCTGTGAGGATCTCCGCTCCTGCGTACAGTGCCAGGCCTGGGGCACCGGGGAGAAGAAAGGGCGCGCGTGTGACGATTGCCCCTTTAAAGTCAAGATGGTAGACGAGCTTAAGAAAG
Seq A exon
GTAGGGGCGGCAGCGTGATACCCTACAGCCTTAATACCAGCACTTGGGAGACAGCAGCAGGTAGATCTCTGTCTACTTAGAGAGTTCAGTACAGCATGAGTGAGATCTCCGGGGGAGGGAGGGGGTAAGGGGTCTGAGAGACAGTGCTGAGTCTAGGCAGGAAGAACCCAGCATGGAGGACGGGAAAAGGCTTGAACTCTGAGTTGAGGCTATGCATCCCGGACTGCGTTTGTGAGCGGAGCTGTGAGATGCCTCAGGACCTAGACAGGGGAAGCCTAGTACAGGTACAAAGTCGGATCGAGAGCCGAGAGGAAAGGAGAGTCCGTGTAGCTGGGAGTGAGGGGTCAGATGAGTAAGCGATAGGGCAGGCCCACAGCACAGTTGAGGGGCCCAGGTGCGGCGTGCTGTTGGATGACAGGATATTATTTGTCTCCTTCTAAGTCAGCTCTGCTGTCTGGACACTATACTTATGATAGTGTGCGGAGCAGGGAAGTGGGGGGGGGGGCGATGAACTTTCAGACGAGCCTGTTAGTGGTGCCAGCCCTGGGCAGGGCAGTCCCTTCATCCTGGTGACTTCTCTAGTCAGGGGACTTACGCTCTTTCCCGTAGGCCACGGAGGAGGTAATACCTCTCCAGGCCCCGGGATGCCCCGAGTGGAGGGCTGGGTCAGGGTGCCGTGCTAACAGTCTGTGGATTTAGCAG
Seq C2 exon
AAGAGGTGGTGGAGTACTGCTCCTTCCGGGATGAGGATGACGACTGCACTTACAGCTACAACGTGGAGGGCGATGGCAGCCCTGGGCCCAACAGCACAGTCCTGGTCCACAAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020758-Itgb4:NM_133663:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079657=Integrin_B_tail=PU(44.2=86.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACGCCTGGGTCTCTGTGAG
R:
TCTTTTTGTGGACCAGGACTGTG
Band lengths:
247-949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: