MmuINT0084222 @ mm9
Intron Retention
Gene
ENSMUSG00000001281 | Itgb7
Description
integrin beta 7 [Source:MGI Symbol;Acc:MGI:96616]
Coordinates
chr15:102049605-102052609:-
Coord C1 exon
chr15:102052520-102052609
Coord A exon
chr15:102049752-102052519
Coord C2 exon
chr15:102049605-102049751
Length
2768 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGC
5' ss Score
4.72
3' ss Seq
TCCTCCCTGCCTTTCCACAGAGC
3' ss Score
10.87
Exon sequences
Seq C1 exon
GAGCTGAGACAGTTGATTCCCAAGTCTGCTGTCGGGGAGCTGAGTGAGGACTCCAGCAATGTGGTGCAGCTCATCATGGATGCTTATGAT
Seq A exon
GTGAGCAGAGAGCGTGGGGGGCGGGGGAGTAGGGGCGAGGGAGCACGGTCCTCAGGTGGTGGGGCATAACTGTAATTAAAAAGGCATGAGTTCTATCCTATCACAGCTCCTATCTACAGTTTGCACATGGCTGCCCTTAGCTATTCGTATATTCACATTCATAAATATAATTACATGTTATTCTTTTGGCCATATTAACAATTGAACCTAGAGCTTTATTATGCTAGGCAAGCACTCTGCTACCCAGCTATACTCCTTACTCTATCTCTTTTTTTTTTATTTGTTTGTTTGTTTGTTTGCTTGTTTTTGGATTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCCTGGAACTCACTCTGTAGATCAGGCTAGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCAGAGTGCTAGGATCAAAGGTCTATCTCTTTTTACTAATCTAAAAAATATTTAAGGGACGCTGGAGAGAGGGCTCAGTGGCTAAAAGCACTGGCTGCTCTTCCAGAGGACCTGGGTTCAATTCCCAGCACCCACATAGCAGCTCACACCTGTCTGTAACTACAGTTCCAGGGGACTTAACACGCTCACACAGACATGTATGCAAGTAAAACACCAATGGACATAATATCTTTAAAAAATGTTAAAGACATACTTGCAGGTAAAACATCTATATACATAAAATAATTTAAATTTTAAATATTTAACATTCATATGTATATATATAATGTGTTTAGATCAAATCTAACTCCCCATTCTTGCCTCTACAGTTCACCAATATATACCTACCATTTTCCCTCTCAACTTCACGTGGTCTTTTTCTTTTAAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGAAACTCTAGAAGAGGGCGTCACATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGATCTTCAGAATTAGCAGTTAGTGCTCTTAACTCTGAGCCAGCTCTGCAGCCCCGTTCTTTTCTTTTTCTTTTTATTTTTTGAGAATCCTTGACTCCATTTAGAGCTGCATGTATGTACGCCACCCAGCTTTTTTTTTCTTTCTTTCTTTTTTTTTTTTTTTTCCTGCCCAACCTTTAAATTTAATTTTGTTGTTTGTTTTTAGAGATAAGAGTCTTGCTCTGGCCGGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGACAGAGGCAGGTGGGTTTCTGAGTTTGAGGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAAACCCTGTCTCCAAAAAAAAAAGAGTCTTGCTCTGTAGCCCTGGCTGGCCTGGAATTCACTATGTAGATCAGGCTGGCCTTGAACTTGTGGCAATCTATCTGCCTCTGCCTTCTAAACTCTGGGATTACAGGTATATGTATACCAACCAGCAGGCTCAGTGTAGACAGTGCTGGGGATTAGATCCAGGGTCCCTTGTTTGTTGGGCAAGTGTTCTAACCCTGAGCTACACTGTCAGCATTTTCCTTTTTATTTGGAGACATTGTGTACACTGATCTATCCATGCCCTTGCTTGGACCTTAGATTACCATCCTATGCCAAGAGGTCCTGCACCACACCTGCTTCATAACTATTATCATCCACATTTAAAAAAAAAAAGATTTATTTATGAGTACACTGTAGGTGTCTTCAGAGACACCAGAAGAGGGCATCAGATCCCATTGCAGATGGTTGTGAGTTACCATGTAGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCTAGCCCTACACTGCATTTGTAACAACTCAGGAACAGAATTTTATGGAGCTTGAATGTCTCTTGAGTTTAAGGCTCATTTCTGTTCTAGACTGTAGACCTTGTTTTACTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGACCTCATTATGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTCGTTTTACTTTTTTAAAAAATGTAAATACAGGGTCTCTCTATATAGTCCTGGTTGTCCTGGAACTCAATGTGTAAACCAGGGTGGCCTTGAACTCATGGCATGTAGCACCTTGCTTGACTGTGGCACAGTTGATAGCAAGGACTGTGTTATTATCTGGATGAGGTGACACGAGCCTGTGATTCCACACATGGGAGGCAGAGGCAGAAGGATCAGGACATTTCAAGGCCAGTTTGGGCTACAGGAGACTCTTTTCTCAATAAACAAGGATGTGTTCTTGGCCTTGGTGAAATGAGTGGAGATGTAGAACTTAGTGGCCGCCTGCCTGCCTAGCATACCTGATTAGAATCACTGCCCCTACCTAACACCAATCTCTTAACCATGGAGAAAAGTCTTGAGACAGTGTTGGCCTCTGCAGACCTGGTTTGGGTTTGACAAACACACCCTCAACATGGACTGCCAAACTGTCGCACATGAAGCTCTAGCTCCTGGGTATCCCAGGGTGGTTCTTCTTTCAGAAATGAATTCTAAGTGGGCAGGGTGAAAAGAGAGCCGGACCAGGTGTAACTATGAGGGTAGAAAGCGGTGTGCGTTGGGGGGCTCGCCTTCACAGATGATTCTGTCCTCCCTGCCTTTCCACAG
Seq C2 exon
AGCCTGTCATCCACTGTGACTCTTGAGCACTCTCCACTCCCACCAGGAGTCAGCATCTCCTTTGAATCTCACTGTAAGGGTCCTGAGAAGACGGAGGGTGAGGCTGGGGACCGGGGACAGTGCAATGATGTCCGAGTCAACCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001281-Itgb7:NM_013566:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(6.8=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: