MmuINT0084223 @ mm9
Intron Retention
Gene
ENSMUSG00000001281 | Itgb7
Description
integrin beta 7 [Source:MGI Symbol;Acc:MGI:96616]
Coordinates
chr15:102048928-102049751:-
Coord C1 exon
chr15:102049605-102049751
Coord A exon
chr15:102049122-102049604
Coord C2 exon
chr15:102048928-102049121
Length
483 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
TCTGGCCCTCCTGCCTTCAGGTG
3' ss Score
12.07
Exon sequences
Seq C1 exon
AGCCTGTCATCCACTGTGACTCTTGAGCACTCTCCACTCCCACCAGGAGTCAGCATCTCCTTTGAATCTCACTGTAAGGGTCCTGAGAAGACGGAGGGTGAGGCTGGGGACCGGGGACAGTGCAATGATGTCCGAGTCAACCAGACG
Seq A exon
GTAAGCCAGCCAGCCAGCCAGCTGTGATAGATACGCTTTCCCTCTTACCACGGGAAAAGTGGATGTGGAAGTGGGAAAAAAGGAGGAGAAACCATGCGGGCAGCCATGAGGAAGGGGTGTATTTTCTTCTTTTCTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTGTAGGCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAAGTCAAAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCGCCACTGCCTGGCAAAGGGACACATTTTCACTTATTCTTAGTTTACTAAGGGCTGGTGTTTGAGCGGTCAGTGAATTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGAGAGAGAGAGAGGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTGTGTACAGCTTTGTCTGGCCCTCCTGCCTTCAG
Seq C2 exon
GTGGATTTCTGGGTCACTCTTCAAGCTACTCACTGCCTCCCAGAAGCCCACGTCCTACGACTCTGGGCTCTTGGCTTCTCAGAGGAGTTAACTGTGGAGCTGCACACAGTGTGCGACTGTAACTGTGGTGATGCCCAGCCTCACGCTCCCTACTGCAGTGATGGACAGGGGGACCTTCAGTGCGGGATATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001281-Itgb7:NM_013566:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(11.2=100)
A:
NA
C2:
PF0036213=Integrin_beta=PD(9.1=60.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGTCATCCACTGTGACT
R:
GCATATCCCGCACTGAAGGTC
Band lengths:
339-822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: