MmuINT0084238 @ mm9
Intron Retention
Gene
ENSMUSG00000032925 | Itgbl1
Description
integrin, beta-like 1 [Source:MGI Symbol;Acc:MGI:2443439]
Coordinates
chr14:124371340-124373301:+
Coord C1 exon
chr14:124371340-124371453
Coord A exon
chr14:124371454-124372506
Coord C2 exon
chr14:124372507-124373301
Length
1053 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CTGTGTTTATTTTATTGCAGGGA
3' ss Score
9.42
Exon sequences
Seq C1 exon
GTTCTTGTCATTGTGGAAAGTGCATTTGTTCTGGAGAAGAGTGGTATATTTCAGGGGAGTTTTGTGACTGTGATGACAGAGACTGTGACAAACACGATGGTCTCATTTGCACAG
Seq A exon
GTACAGTATTGACCTACACTAATTGTTTTGTGCCACAAATGACAATAGAGTAAAATGACATCTACCACACACTGCTTTAGATAGGGCAGAGAGGGCAGCGTCCATGCACTCAAATGAACAATGCCCATGTGTAGTAACTCTGAAAGGAAAAATGAACATCTGTAAATACAAAATAACATTTTCCCTAGAAAAATGCAAACATTGAAAGCCAGATTGTATGACTGCTGGAAAATTTTCACAAAATAACCTATTATATAAACTTACACAAAGACAATTATACAAATACAGAAGTCTGTTGACAACCATTTCATTTTAATATGGTCCAGACAGGGAAGGGGTATTATTTAAAGCAGCATTCACAAGCTACAAGTTGGTGTATTGGCTGTTTTTAGAAAACTGGATATATGTATGAATATGTATGGGGAGGAGATGAGAGATAACAACAGAGTATACTAAATATTTAACTGTGTAATGGCCATCAAACCAAATTTGTTGAGTTCTAATAATTGGCCATAAATAATATTAAACTAAGTTAAATAATTAACCTAAAGTTAATATTTTAATTATAAAATGTATGCCCACTTATTAGATTTCTAGCTGATTCAATATACCATTGGTAAAAGTCTCAGTAACAAAATATTTTTGTAATCAAACATTTTTAGTTTGGTTAAATATGATTATTTTTGCATGACATTAAATTAGACAATCACTTTCTGTCCACCTTACTAGACAAGGATTTCTTCCAGCTCTCAGGTCTGCCTAATTTAATATGAAGGGGCTTTATGCTTTTCAATGTTTATTTGTAAGTCATACATGGTTTGCCTACTAACAGAAGATAGAACTGTGATATGGGAGCCCAGCTGAGTGATGAAAGGTAGGTACTGTTCAATTAATAAATTATGGAATCAAAGAGATGCCATTGATTATCTTAAAGATGTTTAGACACTTTAGGGAGGATAAATGGTTTCCTCATGAACAGATATGGTTCATAGTTATATATTCTAATGGTGTATTCTGATCATAATCATGATTTCTGTGTTTATTTTATTGCAG
Seq C2 exon
GGAATGGAATCTGTAGCTGTGGAAACTGTGAATGCTGGGATGGATGGAATGGAAATGCATGTGAAATCTGGCTTGGTACCGAATATCCTTAATGATCCCATGGGAGACAACTGGATTCTTATTTCTAGGCCATTTTAGAAATTCAGAGGAAAGCATATTACACAGCACTAGGACAGACTTTTGTGTGTTTCTCTATTTCTGACTGCCCAACTGGGTCTTCAATTCAAACAACTTTAGTAAACTGATATAAGTTACACCATAAAGAATTGTTCTCCCATAATTAACATAGGTGTTTCACAAATGAAGAGGGCAATTTTGCAACCCCTAAGACATTTGACAATGTCTACAGAGAATTTGGTTGTCAGACTTGGTAGGTAGGAGTATTTGTGTTATGGGGATATGTCTGTAGTGGCCACAGACAATGGTGACCACCCTAAAGAAAATAGAAAGGCCCTTACAACAAAGTAATTTCTGACATCCAATGTTTACAAAGATGTAGTAGAAAAATGCTAAATCACATGGTATTTAGTACTCCACATCCCAACACCAGAAACACTGTATCAGAATATAAGGATAATATTTATTCTCACATAAACCAACCAGTCAGATTTTTCCAGGATTCCATATGACTCTGAATTTGTATATGATATGATTATGACAGACACATACGAGGTGTGATGATGGATTGGGCGCTTCCCAGATCACAAGGGCTCTAAACTCACAAGAATCTCTTACAGGAAGAAATGATAAATGCACAATTTGACATTTTAATAAATAATAACATAAGTTGTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032925-Itgbl1:NM_145467:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PU(32.3=25.6)
A:
NA
C2:
PF079748=EGF_2=PD(64.5=64.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGACAGAGACTGTGACA
R:
GCCCTCTTCATTTGTGAAACACC
Band lengths:
357-1410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: