MmuINT0088263 @ mm9
Intron Retention
Gene
ENSMUSG00000033027 | Klrc3
Description
killer cell lectin-like receptor subfamily C, member 3 [Source:MGI Symbol;Acc:MGI:1929720]
Coordinates
chr6:129592728-129593306:-
Coord C1 exon
chr6:129593138-129593306
Coord A exon
chr6:129592830-129593137
Coord C2 exon
chr6:129592728-129592829
Length
308 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TCTTCCATTTATATCTGCAGATT
3' ss Score
10.05
Exon sequences
Seq C1 exon
ATGAGTCACCTGCTTGGAACTGAACAGGCCTCAGAACCCAGGAAAGCCACAAAGAAAACCCAGGCGCAGCTCCGTTTCAGTAATGCAGCAGGAGATCGCCTGCTGGAGTTTAGCCTTCAACATGCTTCCCAGAAGCATCTGAAGGCCAGCAGGCATGGCTACTGCAAAA
Seq A exon
GTAAGTCATTGAATCTCGGCATAACCATTCTACGGTGCCAGCAAGCATGCAGAGGTGGGAATAGACCTCTTCAGGAAGGAAAGGAGCTGTAACTTGACCCATGCAATTATAATGCAAGTTGTGAACACGGTTTTCATTCAGACATTGTTCCAAGAATATATGAATCATTTTGTTCTCTGAAAATGCGATGATATTTGCTACAGAATGATTGCAGCATAGAGCAGAGCCTGGGGACTGAATTAATCCTGATGCTCTGAGCCCATGAGCTTCTGTATCCATTTTCTCTCTTCTTCCATTTATATCTGCAG
Seq C2 exon
ATTTTGCATCACCTCCAGAGAAGCTCATCGCTGGAATCCTGGGCACCATCTGGTTTACCTTATTGATTGCTCTAGTAATCTCAACCAGAATTGTTTCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033027-Klrc3:NM_021378:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCACCTGCTTGGAACTG
R:
ATGGAGAAACAATTCTGGTTGAGA
Band lengths:
270-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: