MmuINT0088281 @ mm9
Intron Retention
Gene
ENSMUSG00000071537 | Klrg2
Description
killer cell lectin-like receptor subfamily G, member 2 [Source:MGI Symbol;Acc:MGI:1921503]
Coordinates
chr6:38580281-38587239:-
Coord C1 exon
chr6:38586376-38587239
Coord A exon
chr6:38580383-38586375
Coord C2 exon
chr6:38580281-38580382
Length
5993 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CCTCTCTGTTTGCTCTCCAGGGC
3' ss Score
11.3
Exon sequences
Seq C1 exon
GAAGCTGTTAGTTGACAACGTGAACGACCCGAAACTTCTGGGGACCCAGCCTAGAACGCGACGCTCGCACGGCGAGTCTCGAGTCGGCGCGGAGGACGGAGCGGACCCGGGAAGCGTCTAGAGGAGGCCAGGGTGAGACCGGGTCCCCAGAGGAGCCCTCGGAAAGCTCGGGAATGGAGCCGCCGCAGGTCCCGGCGGAGGCGCCCCAACCCAGGGCCTCCGAAGACAGCCCGAGGCCGGAGCGGACCGGGTGGGAGGAGCCGGACGCGCAGCCCCAGGAGCTCCCGGAGAAGTCTCCGTCTCCAGCCCTGTCCGGTTCCCCTCGCGTACCGCCGCTCAGTCTGGGCTACGGCGCCTTCCGCCGCCTGGGCTCGTGCAGCCGCGAGCTGCCGTCTCCGAGCCCCTCGTGGGCCGAGCAGCCCCGGGATGGAGAGGCGGAGCTGGAGCCCTGGACGGCGTCAGGAGAGCCCGCACCCGCGTCCTGGGCGCCCGTGGAGCTGCAGGTGGACGTGCGCGTGAAGCCCGTGGGCGCGGCTGGGGCTAGTCGCGCGCCCTCGCCTGCGCCGTCCACGCGCTTTCTCACCGTGCCAGTGCCCGAATCGCCAGCCTTCGCCCGCCGCTCCGCTCCCACGCTCCAGTGGCTGCCCCGCGCCCCGTCACCAGGCTCCACGTGGAGCCGAGGATCGCCGCTTGCCGCGAACGCCACCGAGTCTGTCAGCCCCGCTGAGGGTTGCATGGTCCCCCCGGGCTCGCCCGCCTGCCGCTGCCGCTGCCGCGAGCCCGGACTGACCAAAGAAGATGACGCGCTGCTGCAGCGCGCAGGCATAGATGGCAAGAAACTGCCGCGGGCCATCACGCTCATAG
Seq A exon
GTGAGTGCTCAAAAGTGCTCGTGCCCGGTCCCTGAACTAGACTAACCAGAAGCCAATCTGGCTGCCCCCAAATCCATCCTGCTTCTGTCTCAGAATTAATAAGAATCAACCCAGGATCCTGCCCCTAGCCCTCCTCCCGGAAACTTTCCTTCCTTCTTAGTGTGCGCAGCATCTTGGAGAAGTAGAACTCTGGGTAAGGTGAGGGGAGATGATTCAGAATCACGTGGCAGTGGTGGCCTGGGTACACTTCCAAGGGCTGGGCTCCTTTCCGCCTTCAGGAGGGTCACCCATCAGCACACACGCTGAGCTGGCCCCGCGCCAGATGGCATGTGTTTTGCTTTGCGTGTGAAGGAGAGGCAAGTCTAGCAGTGCAGAAAGCCCCTGTGTTGGTTTACTTTTTCTTACTGTGATAAAATGCTGACCAAAAACAACTTGGGGAGGAAAGGTTGTATTTGCCTTACAGGTTATAGTTTATCATCATGGGAAGCCAAAGCAGGAACCTGGAGGCGGGAACAGGGGAACAGTAGCAAAACCACGGAGGAAAGCTGTTTACTGGCTTTCTGCTCGGCTTTCTTTCTTGTACCACCCACCCCACCTGCACCCGCCCGTAGTAATTAAGAAAATGCCCTACAGATTTGCCTACAATCTGTACTTGCCAATCTGGTGGGTGCATTTTCTCAAGGGAGGTTCCGCTTTCCAGAAAATCTTAGCTTGTGCCAAGTTGACAAAACAGTAACCAGTACAGCCCCCTAAAGGTTGTTAGTTAGAGTAAGGAATTGCTCTGTTGTGGTTGGTTTACTGGGCCACCCTAGGTCGTGGGTGGCGGAGGTTCATATTAGCCTTGAGAGAACAGAGAAGCCTGAAGGGACTAGAACCTTGCCCAGTAAGCAAACTGCCCAAACGTGGGGCAGTGGAAAAGTTAAGCGGTAGGGAGCACCCAGGAGTCCTTGGGGGGGGGGGGGGGAGCTCAGAGATCACGAAAAACTTTTAGAACTCTGTGAGCAGATTTCTGCAATGTGGAATGGGTTCGCCATTGCTATTGCAAGTTTCCCACACGCTCGCTCGGTGCCTCTAGTTGATGCAAACTTGGTATCTTGCATCAGAGGTCTGACACAGGCTCCCTAGTCTAAGGAGATGCTATCAGCAGGGCAGTGCTTCTCTCACTGAGGCTCCGGGGCAATTCCCTTACTTCACCTCAGTGAGAGATCCTTCACTGTTGATCCCAAGTAGTATTAGGTGGGATCTGTCTGCTCTGGCACTTTGCCTCCCTCCTCTCAGGTAAGGACCCTCGTGATTACACTGAGACCAGGACAGCCTCGATTTCAGGGCCAGCTGAGCAGTACCCTCACCTCCATCTGAACTTTAATTCCTCTTTGACAAATGGCCCTAGTTTTGTCACTGTTCTAGGGATAATGTCATGCTCCTCTTTAGGGAGATGTTATACCAGCCTATAGCTTTTTAATCTATGTTTTATATTTTTAAATTTTTTATTTTATGTGTATGAGTGTCTGCTTGTATGTCTGTATACCACTTCCATTCCTGGAGGCCAGAAGAAGGTGTTAGATCTAGAACGGGAAGTAAAGGCAGTTAGTTGGAAGCCAGATTGTGGGTGCTGCGAACAACCAGTGCTCTTAACCACTGAGCCGTTTCTCTAGCTCCTTCATCAGATCCTTTAAAGAGTCGGATTGTTGGGTTTGTTCTAGAAATTAAGCTCCTACAGTGTTGCGGAGGAGGGCTGAGGCAAACGCCAGGCTGAGAAGAGACAGGAACACTGGCAGAGGGCAGGATCAGGAGGCAGAGCAGTGGGCAGGACCACGGGCCGGGTACAACTAAGCTAGCTGAAGGATGGAGATCTCTCCCACCATTCTGATGGGTATCTGGATGGTGGGCCATATGCCTGTCCAAAAAGGAAACCTTGTTAGAGAGATTATATATTATAATATACATATATTATAGTATATATATTATTAATATATTAATATATATTAATATATATTATATAGAGAGTTAGAGAGATAATAATAAGGTGCAAGATCCTGCTTGGATGAGGAATTCTTCCGAGTGCTTGATTATCACGAGAGATGCAGTCTAAGGCGAGACTCTGACTTGCTGGATCCCAGCTGGTAGATGTCACAGGCTGGATACTTCTCAGCCCCGTGTGACCTTGGAAGGAGCGAGCTACTATGGAGAGGGTTGGGGGTGCTGTTGCTTAGTCTAGTCCCTTGTTTCTTTGGGCAGGTACCCTGAAGGAGCTGTCTAGCTGTTAGTGAAGGTACTGAAGACCAGGAGACACATTTAAAGACAGGGTCTCATATATGCTAGCTGGTCTCCAACTCACTATATAGCTGAAGAATGACCTTGAACATCCAATTCTCTGGCCTCCACCTCCAAAGCGCTAGGATTACAGGAATGTATCACTGTACCTGGTTTGTGTGGTCCTGGAGCTTCGATGCATGCTGGGCAATTCTCTACCAATTGTTCAGGCAGCTGGCGAAGCAAGAGGGGGTCATGAAGCCGAGAAAGGGAATGGTGGACCACATGCCCTTCACAAAGAAAAGCATGGGAAGAACTGGAAAAATAAAAGGTGCCTTGGTCTGCAGGATCCTGCTTGGATAACGATCCAGTCCCACGTGGTGGATGCGTCTCCCTGGGTCTTGGCTTGGATTCACATTCTCTCACCTCCAAGGGCAACTTAGGGGTCTCCGTGTCATACTCCTCTTGTTTGGATTGTGCCTCATTATCCCAGGATTCTCCACACAGGCTGCGATTGCTCCTTCTAAGTATCTCCTCAGGGAAGGGAGAGGCATGGACTTGCCCACATCTCCAATACCTGGCACATCAGTGCCTTCTCAGTCAGTCTATCTGTACAAGTCAGAACGTATTATTCACCAATCCCTCTGGGGAGAAGACGGGGTGTTTGATCTTGGTGGTTGTCTTAAAATTAGCAAACCACCAAGGTTGAGTGAGTTGGTAGGAATTTGAACGCCCTATGGAGAAGGATCTGAAGACAAGCCTCACCCGGCCCCTGTCTTCCATATTGTGCAGGCAGTAGGGAACATTAAAAAAGTGTAAGCACAAGTCAGTTTGACTACAGCGTAGAGGGCCAGGGAGACTGTTGGAATGAGGCTGGGGGAAGTGGACTCTTTGAAGGCGAGACACATTAGAATTCCAAAGATGGTTTAGGTTTTAATGGTGTAGTGGGGTGGTTAGGAATTTGAAGCAAGACTGTTCTTGGTACTCAGTGCAGAGTAAGACCAATGTCACCGCATGGAGGGGACAGAGGCCCTGAGCAGGAGGTGAGCCTGTCAAGCCTGACTCAGGCATAAGCCCCTTTTTGTTCTTTTGGGGACATCATGTCCTTTAGCAGTAACTGCAGAATCTTAAAGGTCCAGGGTTGGGGGAAGGGAGAGGACATTAAGGGAACCTGGATATGTCTTATGTTCTTACAAGTTGAGTGTGTATAGAGGGTATCTGTGCTAATTGTGTGACTTAAGAGTCACCTTGTAAACCCAGCATGGTGACTCACACTGCAGTCCCAGCTCCCAGGAAGCTAAAGCAGAGGACTAAGTGTTCTTGGCCACCTGGGCCACCCTGTCTTATTTTTGCCTGCTTGCCTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTGTCTGTGTAGTCCTGGCTGTCCTGGAACTCGCTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGTTTAAAGGTGTGCGCCACCACATCCGGCTGCCTGCTTGCTTTTTGACATAGTTTCTCTGTGTAGCCTTGGCCATCCTGGAACTCCCTCTGTAGACCAGGATGGCCTCAAACTTACAGAGATCCACCTGCCTCTGCCTCTGCCTCCCAAGTGCCTGGACCACCACCACCCAGCAGAGACCCTGTATTTTAAAATGAAAATGTGGCAGATGTGGTGAACGGATGCCTGCAATCACTACGTGGCGCGGTTGTACAAAGAAGTTGCTGCAGGTTTGAAGTAGCCTGATCCAGAAAGCTCCAGGCCTCCTGAGCTGTAGAGAACCTATTTTCAAAAGAGAAAACAGAAAGCAGTGGTGTGGGGCCTTGCTCTTTGGCTCTGTGGGGGTCCTCACCAAGCTCAGCAACTTGGCATTAAGTGGGTGTCCCTACCTGGTGTGGGACAACTTACCCACTGGGCTTTTTCATGCTTTGCTTTTTGAAGGTCAAAGCCAAATCCAGGTTCAGATGCAAGAGTCTGACTATAGTGACTGGTGGGTTTATCTTCCTTGTCTTGGCCAAACTTTCCAGTTCTGCTTTTATTCTTTGCAAGCCTTAATTTAAGGCTGGTACAGAGTTTGGTGATAGACCTTTTGTCTAGCATGAACAAGACCCTGGTTCAATGCCCTGTTGGAAATGAACCTCAGTTTATACATACTCTTTGTTGGTAGTGCTTTGCTTCTAACGTGTGTATGTTTTGCCTGTGTTTATATCTATGCATCACATTCCCGGTGCCTGCAGAGGCTGGAAGACGACATCTGATCCTTTGAGACTAGTTGTGAGCTCCTATGTGGCTGCTGGAAATTGAGAGTCCTCTGGAAAGGCAGCCAGTGTTCTTAACCCCTGAGCCATCTCTAGCCCCTGGTCTGAAACTCTTTTTTCTTTATTGAACAGGAAAATACCTGTAGAAGGTACTTTTATTATTTCTTAATATTTTATAATTGTATATATATATTAACATATCTTTATTCCATCAAGCTACTTAATATACTACCTCAGGTAGTTATTAGTTTTTTATTGGATATTTTCTTTATTTACATTTCACATGTTCTCCCCATTCCTGGTCCCCCCCCCAAAAAAAAACACCCTCCCCCGTCCTTTCCCCTTCCCCCTGCTCACCAACCCACCCACTCCCATATCCTGGCCCTGGCATTCCCCTACACTGGGGCATAGAGCCTTCACAGGACCAAGGACTTCTCCTCCCAATGATGTCTGACTGGCCTGAAACTCTTGATGCTTCCGCCTCAACCACCCGAATGCTGGGACTGCAGACTTGTGCCACCACACTTGGCTGTCTGGCTTCTTTGACTTAACATGTTCCAACTTAGCAGTTTATTCTTTTTAATTGCTGGTTAGCATTTCTTGGCATAAATATGTTGTTTTTGATTATACACTTATTGGCTGATAGAAATCCTGGGGATGGGAACGAGGCACTGTGGTGCTCCCTTTAATCCCAGCACTCGGGTGGCAGAGGCAGGCGGATCTCTGAGTTCAAGGCCAGCTTGGCCTACATACCAAGTTTCAGGCCATTCATGACAATAGAGAGAGACCCTGTCTCAAACAAAACAAACAAACAAAAAACCCATAAGGATAAGATAACAGAAAAGAGGTGGGTGTGTCCTGTCTCCCGTTGTTCATAATCTCATTCCCTGCCCACAGCCTCCCAGTTACCTCATGCCCTTGGCCCTGGAGCCACTGACTAGGCTCACAGCTGCAGAGAACTGAGTTTGTACCTGACTTCTTCCATGACCTCAGACCTGGAAAGACAGCTGGGTTTTGATGGGAAAAAAAAAAAAAGGAGTGAAATGTAGCGCCAGGACTTGACCTTGATTGACCTTGACCTGTGGCATTACAGTTTAGCCCCTGCTCGCTCTTCTGTGGCATGTTACCCCTAGTGCCCTGGCTCCTCTGTCCCCTGCTACCTGTAGGCACCTCGCCCACATCTACTGCCTAGCACACACTGTACATGATGTGTGCCAGTCCCTTGCTCTTTTGTAGAGCCTTCCTCTTCTAAGCCATGTGAGAAGGAAGTAGAGCCTACTGTAGCATGTCTCTCCTGAATATAAGGTTCTGATCTAACCTGGGTCTCTCCCTCTGTGGCTTGAACCAAGGTAACCATGCAGCTGGTGTGTGGGGTGGGATAGAGACCTGTATAGTTCTGGGTTGTACGTAGTTGGGGTGGACTCTTATAACTTGCCTCTCTGTTTGCTCTCCAG
Seq C2 exon
GGCTGCCCCAGTACATGAAGTCTCTGCGCTGGGCTCTGGTGGTCATGGCTGTGCTGCTGGCTGTCTGCACTGTAGCTGTTGTGGCCCTGGCCTCTAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071537-Klrg2:NM_001033171:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.736 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: