MmuINT0089642 @ mm10
Intron Retention
Gene
ENSMUSG00000002900 | Lamb1
Description
laminin B1 [Source:MGI Symbol;Acc:MGI:96743]
Coordinates
chr12:31319919-31321139:+
Coord C1 exon
chr12:31319919-31320103
Coord A exon
chr12:31320104-31320897
Coord C2 exon
chr12:31320898-31321139
Length
794 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
AATTTCGCTTCCTGTCCCAGGCG
3' ss Score
7.96
Exon sequences
Seq C1 exon
GAAACTAACCAAAGATGTCACAGAAAAGATGGCGCAGGTAGAAGTGAAATTAACTGATACAGCTTCACAGAGTAACAGCACAGCTGGAGAGCTCGGCGCACTGCAGGCAGAAGCAGAGAGCCTTGACAAGACCGTGAAGGAGCTGGCAGAACAGCTGGAGTTTATCAAAAACTCCGATATTCAGG
Seq A exon
GTGAGAAATCTCAAACCTGGATAATAAATGACCCTGTATCTACCCACTTAATACTTTCTAAAAACAAACAAAAAAGTGTTCTAACAGTTTTAAATCTTTATTAATTGAGTCTTTGGCACAAGTGGGGCTTAAAGTTCTTGGTTTTCCAGTACGGGACCTGGGGACAAGACATAGTAGAGGCCCTACTGCATTAAAATGTGGTCCGTTTCTCAGTTTAACTCCCTGGCCTGTCCTTAGCCTCTGTGGCTACTAAAATATTGTTAATTCTGCAAGTCCTTTTGCATCTGAGATTACTGCTTACTTAGTAACTCAAAAATATTTTAATAATCAATAATGCAGGCTATATCATACCCTCCCCCAAAAGCAAAGGTGACATATGTTAATGACACAATTCCACAGTAGTCATTTTGTTTTACTAGGTCCCTATAGCCAAAATGTACTGTGTTCTTTATGTGTGTAATAATTGTTTGAATGGACCCAAGTAGATAAAGAGAAACAGTCACCTGGACACCTCCAGGCTCCCTGACACCAGGATTTAGATATTTGCCTAAATACAGAAATGGTGTGTGCATGATGGCTTGACTTCTTTCACACCAGTGCTTGACCAGGGGCTGATGGGACAGAAGAGATTTACTGTTCGTAACATGGAAACTCTGCTTCCCTCCAGATTTCTTTTCCCCTTGAATCCTAAAGCCAGTATAAATCAGGGCTATCAGATACCAAAAATGGGCACTGTTTGGGGAGGACCCAGGGACAAGGAGGTTAACTGTGGGCAATTTCGCTTCCTGTCCCAG
Seq C2 exon
GCGCCTTGGATAGCATCACCAAGTATTTCCAGATGTCTCTTGAGGCAGAGAAGCGGGTGAATGCCTCCACCACAGACCCCAACAGCACTGTGGAGCAGTCTGCCCTCACGCGAGACAGAGTAGAAGATCTGATGTTGGAGCGAGAGTCTCCGTTCAAGGAGCAGCAGGAGGAACAGGCACGCCTCCTGGACGAACTGGCCGGCAAACTGCAAAGTCTCGACCTGTCGGCTGTTGCACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002900:ENSMUST00000002979:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=NA C2=0.580
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACAGAAAAGATGGCGCA
R:
TTCCTCCTGCTGCTCCTTGAA
Band lengths:
343-1137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types