MmuINT0090249 @ mm10
Intron Retention
Gene
ENSMUSG00000062061 | Obp2a
Description
odorant binding protein 2A [Source:MGI Symbol;Acc:MGI:2387617]
Coordinates
chr2:25702730-25703326:+
Coord C1 exon
chr2:25702730-25702753
Coord A exon
chr2:25702754-25703162
Coord C2 exon
chr2:25703163-25703326
Length
409 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TCCTTCTCTCTCTACCACAGCAG
3' ss Score
8.76
Exon sequences
Seq C1 exon
ATAAATGTGTTGAAAGTGACTAGG
Seq A exon
GTAAGTGCCCCTCACCCCCCATTGCCTATAGGACTGTGGAAAAGTCTAGAAGGCTGGGCTCTGGATAAGGGACCTCATCCTATCCACACAGACAAGTGTGGTCACTCAGGCTGTGGCCCTTTGTATAGTTCCCATGTTGTATAGGAATTCTGTTCTTCTTGTCATGGTTTCTCCTAGTCCCTGGACTCTACCTGCTTCTTCCTTTCGCTTTTCCCCAGGGAGGCTGAGACCTGGCTACTTATGGAAGTGGAGCAGGCCCCAGCTCCCAGCAGGGACCACACAGAAATATGGGAAAGAGGATCTCTGACCCATATCTACCCTGTGCCATCCCTGTCCATGCCTCCCCTGACTGCTGCTTCTGAAAAAAGCAAAGGGAGGGTGCTTATCTCTCCTTCTCTCTCTACCACAG
Seq C2 exon
CAGCTACCCAGGTCTGCAACAGCTGAGCCAGCCTTGCTTCCAACACCAAGCTGGGACATCCCTTCACCACACCTCTCCTGGACCAAACTTCCCACTGCTTCACCACCACCACCTCAGTACCTGCTCCCCTCTCCCCTGACTCCAAATAAATCTCTTTAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062061:ENSMUST00000077667:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PD(0.1=0.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types