MmuINT0091862 @ mm9
Intron Retention
Gene
ENSMUSG00000025185 | Loxl4
Description
lysyl oxidase-like 4 [Source:MGI Symbol;Acc:MGI:1914823]
Coordinates
chr19:42672435-42673306:-
Coord C1 exon
chr19:42673191-42673306
Coord A exon
chr19:42672572-42673190
Coord C2 exon
chr19:42672435-42672571
Length
619 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
3' ss Seq
CTGTGTACTGTCCTTTTCAGGAG
3' ss Score
11.03
Exon sequences
Seq C1 exon
GCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAATGGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAG
Seq A exon
GTTCGTGGGTTTCTATTTATGTAGCCTCCTGGTGTACTTTGAATGGATTTCTCAAGTACCTTTGGGTCTAAGCTCCTCTCTCCCCTGTCCAATAGCCCTAGGCTCTTGAATATTCTAGCCTGGCAATACGAAATGTCAATTTCTGGCTTCCAAAACAGTGGAAAGTCCTTATTTCCTCTCAATTCCCACTAGTTTGTATCACCTTAAAGGCTTAGCACTTTGAGCAACTCTTGGAGGGCAAGGAATGTGTTTCCTACATGTACCCCACAGTCTGACCCTACGTGATGTATCCAGATGAAAACCAGGCCTGCCAAGGGCTGGTAGACAGAATTAGTTCAGAAAGGCTAGAATCCTCGCTCACGGTTCTCAGGCCAACAGGAACTTTTACTGGAGCATCCAAAGTAGCAGTCTTTGTCATGAATGTTGTTTGCCCATGCTAAATTCAGCTAGCAGGAATTCTGTACTCAGGCAAGTTTTAACTGAACCCATGGACTGGGCAGAAGTACAGAGCTGGTCCAGCCAGTTTGAGGATTAACTAATGAAGCCGGTGAGCAACCACAAAATGCCTGGGCACATGTGCCTTCTCGGTGCAATGGTAACTGTGTACTGTCCTTTTCAG
Seq C2 exon
GAGTGCAGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCATGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025185-Loxl4:NM_053083:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=FE(19.1=100)
A:
NA
C2:
PF0118612=Lysyl_oxidase=FE(22.1=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTACCACAGCATCGAAGT
R:
CTGGAAGATATAGTCCCCTGGA
Band lengths:
253-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: