MmuINT0091864 @ mm10
Intron Retention
Gene
ENSMUSG00000025185 | Loxl4
Description
lysyl oxidase-like 4 [Source:MGI Symbol;Acc:MGI:1914823]
Coordinates
chr19:42593982-42597609:-
Coord C1 exon
chr19:42597498-42597609
Coord A exon
chr19:42595405-42597497
Coord C2 exon
chr19:42593982-42595404
Length
2093 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCTTCTGCTTTGGCCCACAGGAG
3' ss Score
9.85
Exon sequences
Seq C1 exon
GTGGTTGTGAACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATGGACAGCGAGTCTGGTTGCACAACTGCCACACAG
Seq A exon
GTAATGCAGCCACGGCGACGCCAGCCTTGTATAGCTGCCGGGTCTGGAAAACGTTAAGAGGTACACCTGGACGTGCCTTGTGTGTCACAGATGGTGTATACAGACAGCTATGGTAGGATGACATTGGTCATCAACCTCACCACCTAGCAACTATATTCCTTCATGGATGACTGACTAGTTTCCAGTCTCAGATTCCTTCCTGTCCTCCCAAGCCACATCAAGATGTTTTTCTTGCCTAGGTATGGTAGTGCAAGTCTTTAATCCTGGCACTTGGGGAGAGACAGGCACATCTTTTGAGTCCAGGACAGCCAGAGCTATGTAGAGGAACCGTGTCTCAAAACACACACTTTCCTGTCCATTTCCTGTAGTTTTCCTGAACTGCCTTCTTTCCAGGAGAAAGTTCTCCTTGATCTCTGCTGTTACCTCCAGCTACAAATAGCAGCAGAGAGGACTGTAGTTTCAGACAGGGACAGGAAGGAGGTAGCTGCTTTTTAAACAGAACCCCTCCATCTCACAGTTGAACGGTGCCTAGACTTGCTAAGGTCTATGTATTTAAGGCAGGGCTGTCTTGTCAGTGTGTTTGAAGACCTACACAACTGTACTGATCACAGTATCACACAGTGGGATACAGGCCGTCGTGCTGTAGAGGGTGGACAGGCATAGAATCAGAAAGCCCTACCTTGGGGAGTACCCCTAAGGGTACAAAGCAAATGGGGAGCAAGCAGACAGAGTACATGAGATATCTGAGGCAGTGGTATTTGAGCAGGGCTTTGAAAGAGACGAAGACGCAGAAGTGAAGACAAAAATTATTCTGTGGCTGCCTTCTAACTGCCACCACTCTCCAACCTAAGACAGTGGGGAAATCTCAACCCAAAGGCTCATCTTTTCTTTCTTCTCTTCCTTCCTTTCTTTCTCCTTTTTTTTTTTTAAAGATTTTTTAATGGTGTGTGCACGTGAAGGTATGTGCACAAGTGTCCATGGAACCGAGAGGGACTGCAGTCCCAGGCCACTGTAAGCCCCACAGTGTGGGTGCTGGGAACCAAACTCAGGCCCTTAAGAGCAGTCCACACTCAACAGCTCAGCCATCCCTCCAGCCTCAAGGTTTTAATTACAATGTTCTGTTCTTTGAAACAGGTATGTGTAGTTCAGCTGGCCTTCAACTTGGGCAGTCTTCTGCCTCAGCCTCTGTGATCAGAGCTTACTGAGTACAGGCGTGTGCCAGTATGTCTGGGTAGTTTCCTTTTGTGAACATGGACTGTGAGCTTCTAGATCGCTGACGTGCTCCCCAGGGGGGCTGTGCTGGAACAGAAAAGCACTCCCTGGTCTCCATCTCTCAAACAGGGACAGTGACAAAATTTCAGTCACGATGTCTTTATATTTCGTCTGTGGTACTAGGCTCACGCACTCAGGACCTTCCATGGGCTGGGCAGGCACCCTATCACCGAGCTATACCCCTAACCTCATTTGTTTTAAAAATAAACTCCGCCAGCAAATGGGAGAGAAAGAAGGAGCATTAAAGTTTCACATCTGGGTAACTTGAGTAGACTTTGCTGACACAGAACGAAACGAGAATGTGAGAGGAATTGGGACTGTGCACATAGAGATGACAGAGCCTCTCTAACCAGACTGCTAGGGACCCACAAAGACAGTGCTAGAGTCCTATACATGGTACGACTCACTGCAGTGCGCCTGAAGTTAGCTATGTGACAAGAGCTCCTTAGAGGACCAGGAAACAAGTGACACTGAGCCCAGGGGGAAAGGAATGGGAAACTACTGTCCCTGTAAGCTTGCAGGGAGGGGAGCCAGGAGACAGTGAGCTCGAGAGCTCGCTGTCATGGCGGAGGCTGAGATGAAGCTGCTTGGACCTACAGTCACAGACAACCCCTGTCACTGCAGAGCCTCCTTCTGCTGTTGACTTACCAGGTGGAAACCAGGGGACAAGCCAGGTAGAGTGGCCACACAGAAAGAACATGGGGAGGGAACAAACGAGAACCAGTATAGCCTTTCCACACAACAGACGGTGTGCCTGGCTACCCTGATGGAAGGGCGCTGTGGTGGCTTTGTCCACTCAACTCTTCTGCTTTGGCCCACAG
Seq C2 exon
GAGATTCCTACCGAGCCAATGCAGAGCTCTCCCTGGAGCAGGAACAGCGACTCAGGAACAACTTGATCTGAAGCCATTACTGCACTCCCAGCTCTGCTCACACACCAGATACCTCAGCTGACTGGAGCCATGCCCTTCACAAAGCCCTGACTCACAGGACAAGGGGCTAGTGACAAGGAGCACCAAGAAGCTGCTCAGGAGGCCTTTCGGTGGCCAGATCATCACCCGGGATGGCAGTTCTCTCAGGATGGCTCTGGGCCAGCTCAACCTTCTCTTCCTTCAGGAGACTCGATCTTCTTTACAACTTGATGCACAGTTCCCAGTTTCAGGAGCTCTAAGTTCCTCAGGGATGAACTGTGACCAAGGCCCCCTCTAAGTGGTGCTTTGCAAATGTCTTGGAGGACCAAAGGACAGACGACCCGAGAACACAAGCTGTGGATGGAGTCGTTTTCTCTGCTATACGCTCCACGCAAAAGGACCATGTCAAAGTCACACCTGGCAGAGACGCTGGTGAACACAGTCCCTCAGCTTACCCTCACTTAGAACTCGCATCTCAGGCTCTGAAGCCTCTCCTTGCATCTTTACCTTCATTCGGTCACACATGGTGTTTCCAATATCCCTGAACCCTCAGGCCTCCTCCATTTCCTGATGGGTCAACACCTCGATTATTGGGGCTGGGGAGCAAGTTTCACAGAATGACGAGACAGGGCCTTTCCTGCAGAGTAGTCAGAAAGCAAGACGAAGGCTGAGGTCACATGAATTCAGCCTCGGAGGACCTCTGCCCAGGGAGGTGCCATATCTGGCAGGCAGGCCAGTCTCTTAGAATCACCCACATTGTAGGGTTAGCCTAAATTTCAGATTTAACCAAAGCCACTTCACCTTAAACTTTTGCAATTGAGAAGAAATTGGTCAGCCAAGCTCCTCTGCAGGAACACCAAGACAGGTCTAGTAGAGTTAGGAACAGAAGACGGAGTTAACAAGAAGTGAGAAGGAAACCTGGGAGAGGCCACCATCCAGTGAGGCGGCTGTGCTCTGTTCTTGCTCAGGTGGTATAAGACCTGGAGTCTTCCAGGGCATGCCTGGACCTTTTCTCCACTGACATACACACAGATGATCCTTCTAGGTCTTATAATGCCAACAAAGGTTGCTCACTATGGGCTGCCACAAAGGCCAGACCAGCTGAGCTTCTGCAGCTTCCACTGCACTACACTCTGCCCTCTTCCCTCCAGAGCTGGATGACGCTCGGAACACAATCCTTGGCACAGCCCACCCTAGTACATTTCTTGGGTCTCACACTAACCTGCTTCACCGTTACGCTGCCCAAGGTCAACAGTGAATCTTGGGTCAGGAAGGCTGAGAGGTGAAGGGGAGGAATGAGAAGGTGTGACCCAGACTTTAGACTTTTATAACAGAGGCTACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025185:ENSMUST00000026190:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=FE(18.1=100)
A:
NA
C2:
PF0118612=Lysyl_oxidase=PD(1.0=8.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types