MmuINT0092411 @ mm9
Intron Retention
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:127042842-127045121:-
Coord C1 exon
chr10:127045002-127045121
Coord A exon
chr10:127042971-127045001
Coord C2 exon
chr10:127042842-127042970
Length
2031 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
TTCCTTTTCTCTCTGGGCAGATT
3' ss Score
11.15
Exon sequences
Seq C1 exon
AGCTCCGAGCCAACTGTTCTCGAATGGGTTGTCAACACCATTGTGTACCTACACCCAGTGGGCCCACGTGCTACTGTAACAGCAGCTTCCAGCTGCAGGCAGATGGCAAGACGTGCAAAG
Seq A exon
GTGCGTAAACATGACTGTGTGGGTAGGGTGTGTGCATGAGGAGGCTGGCTGCAAGGTGGGCTGGAGCAGGGCCGGGCCGGGGCGGGGGGGGGGGGGGACAACAACAGGGGATGGCGTGGTCCAAGAGGCAGTCAACACATAGTGTGGCTACAAGCCCTCAGCATTGCTTTCAGCCTACCCTTAATATACATGCCTCCAAAAGTTGTAGCTAGCACGTGAATTTTGCTGTCAACGGTGAAACATTAGCCCGACGGCATGGCTTGCACCTGTAACTACCATATTTGGAAAGCTGAGGTGTGTGGATTCCTGTGAGTTCCAGGCCAACCTGGGCTGCAGAAGGAACCCTTTCTCCAAAAAGTAGATCACGCACGCTTTACAGATAAAAACACAAAGCTCCTTCGCAAAGTTTCTTCAATTCCAATGCTGTTCCCCTCTTCCTGGAGGGCAGACCTCCTAGTCATGTGTGTGCTGCCCTACTGCAAGCCTCCTCTCCCGCCCCCCCCCCGCCCCCACCAAAATCTAATTGGAAGTATTGCTTGTGTGTGTGTTCTCTTTCCGTAAGTGATGCCACACTGTGGGTATCACTTACAGTGTTTCTCTTTAGCGTGTTCCAGGGATTTCCCCGCCCCCCATCCCTGGTAGTATGTAGAGATTTATCTCATTCATTAAAAAAAAACCACTGTGACGTGAATCTATGACCACAGCTTACTTGGCCATTTCCCTGTTGATGAGTAAGATGTTCCCAATGCGAACTTTTCTGTTTTAAATGGCCCCAAGTCTGCACAAATCTACCTTCTTGATGCAGCTACTCTGACCTCTCTAAATCATACTCTTGTGACCTGCCTTTCTCTGCCTTTCTCTCTCTGTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTCTGTGTGTCTCTGTCTTGTCTGTCTCTCCGTATGTGTGTCTTGGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCACGTGTACGAGTGTTTTACCTATATATATGTTTGTGTACCATAAGTATACCTAATGTCCATGGAGGGTGTTGGATCCCCTGGAACTAGCATTATGGGATGGTTGTGAGCTACCATGTGGGCACTGGGAATAGAACCTGGGTCTTTGACAAGGGCACCGGTGTTCTTAAACCATTGAGCCATACGTCTAGAGGTCTCTTCTGTATTTTTTTAAGATTTATTTATTTTTGTATATATGAGTGTTTTGCCTACATGTATGTGTGGTACCACATGGAGACTTGGTGGCTAAAGAGGTCAGAAGAGGGTATTGGGTCTCCTGAAACTAGTATTCCACATGGTTGTGAGTCACCACGTGGGTGCCGGGAACAGAACCTAAATCCTCTGAAAGAGCTGTAAGTGTTCTTAACCACTGAGCCATCTCTGCAGCCCCTGTGACTTTTATTTTAATATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCTAGAAGAGAGCATCAGATTTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTAGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCGGTGCTCTTAACCGCTGACCCATCTCATCAGCCCCCGTGACGTTTATTTTTAATGCAGATCTAGGGATCAAACCCAGGGCCTTGCATGTGTCAGGCGAGCACCCTGCTGCTACTGTATGTACCACAGTCTTTCATTTCTGTTATCCCATCTCCTCTAACTTAAGCTTTCCCTTCATCATAACACCAACCTTCCGTTTATCACCAGAATGCAAGTTTCATGAAGACAGTAATGCAGCTCTGTTTTCAAATTCATCATTGTATTCTCTACCTGCCCCATCTGTTATCCAAGAAATGTTTTCCAAATCACTGTCAGTGCGCATGACCCAGAAAATCCCAAAACTGTTTGCCGGGCAGTGGGTTTGCACCTTCTGAACTGTAATCGATTCCGCCAGTTGTCTGCTGGTGTCTCGGGGCACCTGTGCTACACTAGAATGAACATCTCCTCTTCCTTTTCTCTCTGGGCAG
Seq C2 exon
ATTTTGACGAGTGTTCCGTGTATGGCACCTGCAGCCAGCTTTGCACCAACACAGATGGCTCCTTCACATGTGGCTGTGTTGAAGGCTACCTGCTGCAACCGGACAACCGCTCCTGCAAGGCCAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249-Lrp1:NM_008512:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=87.8)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: