MmuINT0092532 @ mm10
Intron Retention
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:40876542-40879587:-
Coord C1 exon
chr2:40879465-40879587
Coord A exon
chr2:40876683-40879464
Coord C2 exon
chr2:40876542-40876682
Length
2782 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TGTTGCATCCTCTTCTCTAGGAT
3' ss Score
10.33
Exon sequences
Seq C1 exon
CACCCAACAATACATGTGACGAAAATGCTTTCATGTGCCATAATAAGGTGTGCATTCCCAAGCAGTTTGTCTGTGACCATGACGATGACTGTGGAGATGGGTCAGATGAATTCCTACAGTGTG
Seq A exon
GTGAGTAAGGCATCTTATAGGATAAATCAGTTGAAGGTCTATCAAAGGGACTCCAAGACACAGAAGTAACCAAAACAAACAGACATTTATTAGTGAATTCAGTAAATTCAGTGCTAAACAATGGAGTATGGGAGTTTGTCAGGTTCTGAGCACATTCATTTCTAAAACATTCCCTTCTTTCATGAATTCTGAGCAACCACCAGTCAAACTGGGAAATGTCTAGAAAAGGCCTTTGCATAGAAGTAGTTAGAATTGCTTTGAACTTTGAAGACGAGACATGACAGGCTTATCTAACCTTAAATGTACATCAAACAATGATATACAAACAAACAAACAAACAAAGAAACCAAAAATGCCAAAAGATTACACTTTTAAAATCTTCTGTACATTTAAAATATCAAAGAATGAAGTTAGCGTTTTCCTTAATATTTTACGTTGACACATGCACTACCTAATGTTTAAATTATCATTATGATCATCAATCGTGTCTCAGAATTATGTTGTTTATCTAATTATAACATTTATTTCTTCCAGAATAGGATTTTTAGTAGAACTAGTTATATATTAAAATTCAGTTTAGAGTGTTCTGTAAGCATAGATTCTTTGTGAATACTAAAATGCTAGGAATGCGTTAATTTACTTAACACATGTGCAAGGGTGATTCATGTGCTTAGGTAGCGTCCGCACCACATGACTATCCTTTATGGAAACTCACTGAAACCTGACGACCACCTTGGATTGCAGACCCAGGGCCTATATTTGACCTCCTTTGTCACGGATTTAGTGCTCTGCAGACTCTTCCCCATGGACTGCATTCAGTGTGTTCTGCTGTTCTCCATGTGAGGTTGACTAAGAGCCATATTTCATTCTTTTGTGATATTTCTATCTTTAGTCTTAGATGGGATCTCTGAGAAATCTTTTATTTATAATTATTTCATATTTTAGCCTTCAGTCAATATATTTTAAGTAGTATATCATAATTAACATATAATGGTTTTATATTGGTCATTTACTTACTTGTCTATTTGAGATAAATGACTGGCATAGTATTTGCTATGTAGATTAGCCTGTACTCAAATCCATAGATATCCCATGTCCTCGAATTAAAAATATGTACTACAAGGAAATAGGATATCACAATAAAATTTAACTTTAAGAACTCTCTCTTTTATCATAGTTCAAGAAATACTGCATACATGAGTCTAATCTGTTTAGGAAATTACTAGAACATTTTAAAAGTGAACAGTGTGGATCTAAACCATATCAGTAATGGTGCCATAGAAGAAAACAGAAAACTTATAGCTTACTCATGGACTTTTAGCTGGGAATGGGCAAGATAAAGACATTTCCAATTGATATGAATTGGAGAATGGCAGTACTGCTGGTAAGCTTAGGTACACAGTAATGTGATGGATAGTTTTTGTGACGTGCGAAAGAAATGAAATACATGGTTGAAGATTTGAAATTGTTTTAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGCAAAACAACAACAGCACAAACAGTATTCTGGAGTCAAAATGCTGTAAGTTGTATCAGAAAAGGCTTTTTTACAGGAAGATGGAAAAAAAAAAAAAAAACCCTGGAGAGTAGATTATGAATACTTAACCAGGAAGAGTGTGCAATCAAGAGCAACAAAAATGCTGCCAAAAAACCAGTCAGTTAGAATCCTGGGAGACTTAAATTTGACAGCTTTGCTTAGTATTTTTTTCTTTAATCTCTAAGAGGAATTTCTAAAGAAGATGTTACAGGAAATGATGTTCAATTAATTAATGGGAAATGGAAGTTGGTAAGTAGAAACAAGATTTTGCATAAAAGTAAAGCAAAGAATTGTGCTTAGGGAGATGAAGGTGGATTTGTGGCTGATTGGACCAGACAGGATTTGTATGCTCACTAACAGGGACAACCTGCTCTTGCGGGGACAGGCTATAAACAGGATGCAGCAGCAGATTCCACTTTCACCATTCAGTATGACGAATTCTTCGGTAAGATTTGCAGTGAATTGTCTTTGCCACTTTAGAATGACTTAATAAAATTCTACCTCTAAAAGAAGAATTTTCCAGTTTTATCACTACTTACTAAGAATGTCTGTCTATAATTTACATGAAGGAAAATGTCATTATAAAACCTAATTTACAAAGTCAAGCATAAATATAATTCAAATAAAACAAACAGATGTTAATCTCAACAAATCATGGTTTATTATATAACTCGACTTTTAATGAATTGGCATACTTGACAGTTACAAACAATTTTATACTCATTCTTTTATAAATAGGATTTTATTCTTATTAAACAATTTCTTTCTGCACTGAATAATGTTTGTCAAGCATAAGTATAATATTACAACTTCTAAAAATAGTTCTTAGAGCTCAGAATCCATTTGCCTGTAAGTTCTAATGCTGCACATAACCACGCAACCAAGTCTGTGAATAGATTATAGTAGTGACCATTCTGCTTCACATCCTAAGAGAAATGGGTCGGATATAGACAATCACAGAATAGAAACAGTTGCATGTGTGGTAGTCATCTATCCTTACCTGGTATGTTATTTCCAAGATTATATTTGACCTTTTATTATGCTTTCACAAACACAAAAATATTGCTTATAGAAGTAATGGAGAAATGAGACGTATTTTCCAAAGAGGTCCATTCTGCCTACTTGTTAAATAGGGGTGCTGCGCACTGAGAGGGTGAAGTGCTGATTAATTTTTATGACAAGAGCTTAGTGAATGTTGCATCCTCTTCTCTAG
Seq C2 exon
GATACCGGCAGTGTGGTCCAGAAGAGTTCCGCTGTGCTGATGGGCGCTGCCTCGTGAATACTCTGTGGCAGTGTGATGGTGACTTTGACTGTCCTGACAGTTCCGATGAGGCTCCAATCAACCCAAGGTGCAGGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252:ENSMUST00000052550:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.5)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types