MmuINT0093771 @ mm10
Intron Retention
Gene
ENSMUSG00000040488 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:MGI Symbol;Acc:MGI:1321395]
Coordinates
chr7:27328740-27329042:-
Coord C1 exon
chr7:27328968-27329042
Coord A exon
chr7:27328863-27328967
Coord C2 exon
chr7:27328740-27328862
Length
105 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
AACTTCCTCAACTCTTGCAGATG
3' ss Score
7.89
Exon sequences
Seq C1 exon
GGAACTCCAACCAAGTGAGTGGCCCAAATGGACCTTGTCCACCCGGCTTCGAGAGAGTTAATGGGTCCTGTGTAG
Seq A exon
GTAAGGCCCGGCAGGGGGCAGGGAACCGAGGGCTAGTCTTTCAAGGTTGGGCTGCCAGGGGTTTAGTAGTCCCAGACTCGCCAAAAACTTCCTCAACTCTTGCAG
Seq C2 exon
ATGTGGATGAGTGCGCCACCGGTGGGCGTTGCCAACACGGGGAGTGTGCCAACACTCGTGGCGGCTACACGTGTGTATGTCCGGACGGTTTCCTCCTGGACTCTTCCCGCAGCAGCTGCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040488:ENSMUST00000038618:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCAACCAAGTGAGTGGC
R:
CAGCTGCTGCGGGAAGAG
Band lengths:
191-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types