MmuINT0095763 @ mm10
Intron Retention
Gene
ENSMUSG00000078627 | March10
Description
membrane-associated ring finger (C3HC4) 10 [Source:MGI Symbol;Acc:MGI:2443469]
Coordinates
chr11:105401652-105408814:-
Coord C1 exon
chr11:105408643-105408814
Coord A exon
chr11:105402201-105408642
Coord C2 exon
chr11:105401652-105402200
Length
6442 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCTTTCTTTCTTTCGTGCAGGTG
3' ss Score
11.22
Exon sequences
Seq C1 exon
AGTTCCTGTGAGGAGGATTCTCGCAGTGAAGCAAGATTATCTACCAAAACATCTTCGGCTAAGTGTGAGCCCAGACTTCCAGCCATTGACCAAGCATCTGTCAAGCAGAAACACAAAGGCACCATGACACTAAAGAAGTCAGAGAAAGTGAGCCCCAGCAAACCCTCTCCAG
Seq A exon
GTGAGTGGCTTCCTTTCTGAGATCCATCGCCAACATCCCAGTCTTAACAATCACAGCAAACAGGTGGGGTTAACTAATCTAGGGCTTGCCAAGTACCCAGTTAGGTCTTGGGAGGCCAATGAGCCTGTACAAAATTAATTTCTCAGTAGAATATGCTCCCATATCTTCAGGCCCAACTCTCCACATCCTGTGCTCTTCCTTACAAATGCTGCCTCTTGTTCTTCTGCCACAGTTCTTCTGTGGTGGGGACGGGTGGAGGCGATAAAGGCATTTGGCCCCAGGTATCAAGTTTTATTACTAAGGCAAGAAGAGCTTTCAAAAGCATCTGAATGACATTATTTACAGCTGAGAGCAAGAGTAATAAAGTCCTCCAGTCCCGGGGTTGTCCTCTCAGGGAGAAAGGGAACTTGCTAAATCCTCCCTTTTGTGTGATTTGGTAAATAATTCACTCTTATGCTGCCTTTGAAGCAAAGGCCAGTCCTCTGTTTGGGGCAGGAGAGACTCATACTATCTAACAAGAAGCTCAAATGGAGGGAAAGTTTAGAATGCCTCAGGCTCCTCCCATCAAAGGCAACATCTGTGGGACAAAACTGTGTCCTCTGGGAACCACATGCCAATTGGGGTAACTAGGCAGAAAGGTCTGCCTCCTGGGAAAGGAGCCAAACTTAACTGCTAAAGAATTCAATTTGTAAATAGCAAATAGCACGCAAGTCATTAGAATCCCAATCACAGCTTCTTCCTAATCCTAAATAGCGCTGTCATGCAACCACTGGTCTGGTTAAGTCCGAATGCATTTGTAGAAAATGGCACCTTTCACTCAGCTTAACCACCCACATTCGTTAATGAAGTCAAGACCAAATTGACTTCTAAAGTGCTGTCCTCTTGTCTTGGCAAAGCACCAACTGCTGCTCCTTATTTCGTTGTGGGTGGGGGATGGGGGTGGGGAGATATGGGGATGCTTCAAGTCAATTTCTCGTTTGAAAGACTTAATAGAAATTAGGGTTTTAATTCAACTATCTTAAGGCTAGAGTAGAGCGCAGGTGAGTTCACTCTGCAAATACTATATTGACTTGAGGTTGGGTTTTAACCGCTATACTCTGAGGGTGAGTTCAAATCATGCAACTCCATATAGTTAGCCTTCTCACTAAAACCCTGGTAGCTGTCTGTTTTGTCATCTGTGGATAAAAGTCATTAAAATGAACCTTTGAGGTCCACTCTGTGATTTGGGTTGTCTGATTAATAATACAGATGTTTTTCAGACTGAGCAAGCTCTGTGTGGAACTCACAATACTGACAGACAGGGAGTTAATTCACATTCCATTCTATAAAACATCAAACTTTGAAGAATGATCAGGCTAAAACCCGCCAGGGTTTAGGCAAGAAATCCAAGTTGATGAAAGGAGATCTTTTTTCACCAAACAGCAGATCTGACATAGCAAATGTGTTTTCAAGCTACCATCTTTATCTTTCTGTTATGTTCTAGGCAGAACTCAAGACCTATAGAGCTATAAGCAGGCTGGGGGGGGGGGGGCTGGCTGCCCAGCCAGCACAGGGATTTGGAGGTTAATATCAATGCCATGGAGACTGAGTGAGAGGGTACAGCAATCTGAGATGTAGCCCCTTCCCCCACCCCAATCAAACCCCTGCCTGCCAATCCCACCCATAGCCCAGAGTGTTAACTACCATGCACAGGGCCTCAGATTAAAAGGACAAGAGAGAAAGAGGCTAAGACTGGGTCCCAAGTTGGATCGCAAACTCAAGGCCAGCCTGGGTCACATAGTAAGACCTTGTCTCAACAAGAAGAGGACGAGGAAAGAGGGAAAGTTAGGCAAGAACAGGTCACTGGTGGGTGGAACCACTGGTTTAATGAGTGTTGGCTCTTCCGATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGGCATCCAAATATTTTTTTTTTCTAATTTCCATTTCTTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGGCTCTTCCGATTTCTAATTAGCATCACAAAGTGAAAGCTTAAAGTTTTAACCTGAGTCTGTTGAGGAAAAATTGGGAACTGGGGGCTAGCGACAGTGCATGGATTAATTCAGATAAATACCTGCTATGACAGAAAAGAGGATTTGGTTCCTGGATTATCTGGATGCTGATCTAGTTCACCAGCTGAATCCAGTTTCCTGCTTCACACTTCTAGAGAATTTAGGGGTGAGCCAAAGTTGGCATGACGTCATCAAAGCTAATTTCCACATCAGATTTAAGCAAGATAAAGGCCCAGGACACAGAGAAACCCCTTTTGTGACGTTTGCCTTCCAGGTTAACCCTCCTTTTGTGCTGTATTATGCCAGGCTTTCCCAAATGTAAAATGTAGCTGGAGAATTTGGCTTGCTTTTCCATACCTCGGCATGATACCAACCTGTATCTCCATCCTAGAAGTTCATGAGCTGTATTAGCAACCCAGACATGGCGGCTGATAGCCTAAGCCCAGGCTGTGCCTTCTCCAAATAGATGTCTCACAGAAAAGACCCCATGTTCTCACTGTTCCCTGCAGGCTGTCCAAAGGAAGTCGTGTGTCCCACACAGCTGCACCCGAGTGCTCCGCTTCGGCCCTCCCTCTCGGGATAGTGGGACATATAAGCTGCTCATGGGACAGTGCTTAGGAGACCACATGCCTGGACTCTCACCCAGGCCCTCACTTCTTATTCATTATAGATCTTTTGGCAAGGAGCTTCTCTGTTCCTCAGCTTTGTCATCTGTAAAATGGAGGGACGAGGGGGTAATAACAGAATCGTTGTGCTGGGTAAAACGTAAAGGCTCAGTGATAAATACACACTCTGCTGTTAAGCAATGCTGACCTCTCAGTAGAGTGTGGCATTACGTTAACTAGCACAGGAAAGTCTATGGTAAGGAGCGCTGACCCGAAAACTTCTGATCCCGTGCCTAACATTTGCTCTTTCCTCTCCCCGGTGGATTTATTATCTTCATAAAAATTGAAGGTGTATCTTTAGAACTCCCTCATAAGGGGCTGGAGAGTTCGCCCAGTGTTTAGAAGCCCTTGTTACTCTTGCAGAGGACCTGGGTTTGATAGCCAGCGCCTAAGTGGTGGCTCATGGTCATCTATAACTTCAATTCCAGGGGGCGCTAGCACCCCCCCTCTGACCCCTCTGGGCATCAGGCATGCATATGCATTGGTGCACATGTGCACATGAAGATGGCTCATACACAATAAAATAGAATAAATCTCAAAGAAAAAAAAAGTAATCCCTCACATACACTTTTACTACATTCTGAACTTCCACAGCAAAACATCAAATAGGAGAAAATAGATAATCAGACTTCATTCCCCAAGCCTGGGACAACCATTGTCTCCAACAAGACATGGAAAGTTTAGGCAGGGTGTCAAGGCACAGCAGGGTCTGACATGGATTGGATCCAACAGTTCTCCTTCAAGGTGAACCCTGGTGTAGAATAGAAAATGAGCCTGGCAGGGTTGCACACGAGCTCAGAACTCTGTGGGACCTAGAGCACTCAGCAGACCCCAGGAACCCAGGGACAGCACGGGGCCCAATGGAAACTGCGGGGCTCCCAAGACCTTTCTCAGTCCCAGCCTGGCTTGGAAAAGAGCTGTGTCTCCTTCCCAGGACAGAAAGGCACCCAGAGGTCATTGTGATGAGGGGGTTCTGGCACCTGCTGCCCTGCAGCTCTCTCTACCCCAGGGTCAGGCCTGCAGGCAGCCACTGAACCTGCCCCTGCTCTGCTGCCCTGCAGCTCTCTCTACCCCAGGGTCAGGCCTGCAGGCAGCCACTGAACCTGCCCCTGCTCCCTGTTAACCTGGAGCCTGAGCTGAAGGCTCATACCCTCTGGTTATGTTCCCAGTCCTGGGAGCCTGCTTCCAAAACCGTGCCCTTTAGAGCAAAGCCAAGCATCCGGAAATGCCCCTCACTTATCATTCAGTTCAATGTGTCGTCAGTACCGGATTCAGAGAGGCAGGAGGGGCCAGGCCTAGCTCGTCTTACCGTGCCTTATCTTGGAGACCTGTTCTTGTAAAACTCAGGAAAGCAGTGAATTTGGGTTTCAAAAGATAAAAGTCTAAAATAGATGTGGTTGGTTTTGGATTAGGAATGTTTATTTAAAGAGCGGTGTGGAAATCTCAGGGCAAATCCTAAATCTTCATAATTTGCCTCGCAAGTAAATGCTATTGAAGATTTTCTCAGAAAGGCCAACGTTAATGGGTTTCTCGGCAAGTCCAGCTGATGCCCAACAACTTTCCAAGCTGTCTGCCCAAGCCAGAAAAAAAATAAACAACAAAAAAAAACCAACCAAACAAACAAACAACAACAACAACAAAACCAACATAAGCGAATCCTCCTGGATTATAAAGCATGCCCTAAATCTCAGCCCATTGCTGCTGATTACTTGCCCTCGGGGTTCAGAATGCCAGCTCTACTTGAGCGCCCTATGACTGTTAAGTTAGCAACCTCCCTGAACTCAGTGATGGAGCTGAGGTGTGGCCTACTCTACCAGGGAGACAGTAGGGTTAAGTTGCTGGGTATTGGCTATACCTCAGGGAAACATTGGTCCCCAGTAACACCCATCCTATGAAGCCTACTCCCAGTGTAGTGTGTGTTTCTAGGCCTCGTAGCTCTGTGAGGACAGTGCGTGGCCAAAGAAACTTTCACTTTAGATGTGAGAGGCATTGTGACTTGGTTATAAAAAGCTTTTAAGTGTATTGGTTTGTCAGTGAGGTCATCCATTTACCCAGCATGTTTAGGAATACAGCCAGGCTGCTAAGTTTCACACTGATAATAGCTACAATATGAAGAAGAGACTGGTCAGGCAACCAAGGGAAGCCAGATGCAACCAGGGACCATTCCAAGGGTCTGTGGGTCCAGGGAGGAATGAGAACTGCTTTACCTGGAACAAACACCAAGAAAACAGAGAAGACATGAACTGGCTGCCACCTTGGTCTCAGTGAGAGTTGTCTGAGTCAGGTTGACCTGTAGGTGTGTCTGCGGGGAACTGTCTTGATGTGGAAAGACTCAGCCCCCTATGAGAGGCACCATTCCCTAGGCACTGGGTCCTGAACTGTGTAAGAGTGAGGCTGAGCTAAGCATAAGTCAGCATCCAAGTGAGCATGTGTCCATTCATTCCTCTCTGCCCTCGACTATGGATGACGAGGTCGTCTGCCTGGAGCTCCTGCCTGGTCGCTTCCCTGCGGTTATGGACTGTAACCTGGATGTGTGGGCTAAAATGAACCCTTTTCGCACTACATTGTTTCAGGGTATTTTATCATAGCAGCAGAAATGAAACTAGGACAGAGGGATTGCAATGTTTAAGGATGTAAGCCTGGGAGAACTTGGTGAGTTAGTTGTGTAGCTCAGAGCTCAGAGGGGAACAAGGCTACAGACAGCAGACATCACCTGCCTCATACTACAGATGAACAAACAGGTTCTGAGACTATAAGTCGCTGATTCAAGGTGACCTAGCTGGCTGGTAGCAGGCATGAGGCAGTCAGTCGGAATCCTGCTGCCATCAGGCACACACTGCCTCCATCGAGGCTGGCAGTTAGAAAGTGAGGTTAGTGAGCAGTCATTAATTTCCCCTGGATTCCTCTCTGGTCCACCTGCCTACCCCCCCCCCAATCTTTTGGTTCTTCTCTGTCCCCACGAACCCACCAGGATCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTCTGCAGCAGAAGAGCCAGGTTAGGGTATGACCAAAGGCCAGGGGAGGGGTGGGAGGGTGCAGCTGGAGAACTAGGGGAGAGCGCTTGCTGGAAGGGAGACCCTGCGGGCCACCATCTGTTGCTGCCAGAACAGCTCATTTGGCTGGCGGTGGGAGCTGAGAACCGGCAGAAGCTTCCAGGCGGTTGCCTCAGGACGCTCGCTCACTCTCAGGAGCTTGTCTGGGAATCACTTCCCTACATCTGCCAGGGCTGCAGGAAACTATTGCCTGGAAATGGTTGGAAGGTGACGCCACGTTGAAGGGCTCACTTCTTGTATGACTCAGACCTGAGCAAGATGCCTCCTGGGCAGGAGCCAGGTCTCCTTACACCTATGACACCAGACACAGCGCGCCCACCCCAAAAGACCTACCAACCCCCCCCCCCCATCTTTTTTTGGAGTTTTTATTCGTCCACAGACTTTTTGAAATGTCCTCTTCCCGTGAATGCTGCTTCCTGACTGCTTTCTTTCTTTCGTGCAG
Seq C2 exon
GTGACAGCAGCGAGCAGCCCCTGTTCTGTGTTGAATATTCCCCTTACTGCTCCGTCTTTGCTTTCTCCCCAACCCAGCAGCCCAATACCAATTACTGCTGCCTCCTTCTGCCCTTAGTTCCACCAGCTGCCCAGGGGGCCCAGAGCCCTTCCACTTCCCTCCCTCCCGCCATCTTTCCCACCTTCTCCACCCCGCCCTCAAGCCCCCTGAGCCCCTTGCTGGGGTCTCCAGCATCTCTCTGCTACTTCCCTGTCTCCCAACCGACTCCAGCCGAGACCCCTGTGCTGTGTCTACCAGGCCCCAGAAGGCCCAGTAAAATTTACCTCATATGGTAAGTCACCCCTAGCGAGGCACACAGCACAAAAGAGTCAGAGAGTGGGGGACAGCAGAAGGCAGGTGGACAGGAGCAGGCCAGAGCAACACCAATGGGGTGTGGTGTGCAGGGGGACAGGAAGAGGAGACAGCGCACTGACACTTCCCTTGATATGGGCGTCTACTAGTGGAAAAAAAAAAGGAGTGAATGACCAATAAAATCCCATCATCTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078627:ENSMUST00000100332:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types