MmuINT0097946 @ mm10
Intron Retention
Gene
ENSMUSG00000041921 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Coordinates
chr2:71511412-71512168:+
Coord C1 exon
chr2:71511412-71511560
Coord A exon
chr2:71511561-71512125
Coord C2 exon
chr2:71512126-71512168
Length
565 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTC
5' ss Score
6.49
3' ss Seq
TCTCTCTGTTTATGTTTCAGCCG
3' ss Score
9.69
Exon sequences
Seq C1 exon
GTTGACATGACAACTGAAGAGATAGATGCGCTTGTTCATTGGGAAATCATCAGGCATGACGCATATCCCTCACCTCTGGGCTATGGACGCTTTCCAAAATCTGTTTGCACCTCTGTAAACAACGTGCTCTGTCATGGCATTCCTGACAG
Seq A exon
GTATTCATTTTTCAATGATGTATTGCCCCTTTGGAAACTAAGATCCATAGCACGTCCTGAAAAGCACCGTGGTTCAATTGAAACCTACCTGCACGCACACTTCTGAAACTGATTATGATGAAACACAGATTTTGAGGTATTTTACTTCTTCCTGGCTGTACCACTACCATTTGATGTTTCTTAAAGCAGTGTGTTAGCCACGAAGATATTTGCACATCGCCTATTTCTTTTACCTTGTTCAATTCTCACCATATGGTAATGGAGGTAAATTTTTAGTGACAGCTATTGTTTTGGCTGTTTACAAACTTAAGGTAATTAGAAAGTATATCTTTTTAAGGAATCATCAAATCTTAAGGCAGCAATATTTGTTTCATGTATTTCCTATAAAATATGGCGTGATTAACGTAAGGCCAGGGTCAGATCCGGTTAGTCCATCCATCCCTGCCTCGCTACGGATTATCCTTGCAGCTCATTGGCTTTGCAGTAGTGGTCCTTGGGTGTTTATGTTCACGGTTCTCTTTATTGAGATTTGTCTATCACCATTTTCTCTCTGTTTATGTTTCAG
Seq C2 exon
CCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041921:ENSMUST00000037210:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(21.5=100)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types