MmuINT0098796 @ mm10
Intron Retention
Gene
ENSMUSG00000040987 | Mill2
Description
MHC I like leukocyte 2 [Source:MGI Symbol;Acc:MGI:2179989]
Coordinates
chr7:18858141-18858654:+
Coord C1 exon
chr7:18858141-18858419
Coord A exon
chr7:18858420-18858523
Coord C2 exon
chr7:18858524-18858654
Length
104 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TCATGGCGGGCTGGTTACAGGGC
3' ss Score
3.12
Exon sequences
Seq C1 exon
GACCCCCAATGGTAACTGTGACCTGCAGGAACTATCCAGTAGGTAGGGTCACACTGACATGCCGGGCTTTTAATCTGTATACCCGTGAGGCCACCCTGGTCTGGCTTCAGGATGGGAAGCCAGTACAGCAGAAAACCTTCAGATCTGAGACCATCCTGCCCAGCGGGGATGGGACCTACCAGGCCCGGGTGTCCATTCGGGTTCTTCCTGGACAGGAACCACAGTTCAGCTGCAACCTGAGGCATGGCAACCATAGCATCATGCAGACAGCTGTCTCTG
Seq A exon
GTGAGAAAATGGGGCAACCACCCACCTCAGGGGTTGGGAGACAAGAGCAGGAAGGACCCATAGGACACACAATGACCACGCACTTCATGGCGGGCTGGTTACAG
Seq C2 exon
GGCATGCTGCTGAGGACAGTCAGGATGTTGCTAGCTCTGCTACAGCTTCAGCTGGATCTGCACTCCCTGTTGTATTGGCGGTGGCACTGGCCAGAGCCAACTGAATCCAGAACACAAAGGACAGGACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040987:ENSMUST00000072386:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.294
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=86.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGACATGCCGGGCTTTTA
R:
CTGACTGTCCTCAGCAGCATG
Band lengths:
251-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types