MmuINT0102292 @ mm9
Intron Retention
Gene
ENSMUSG00000075464 | Muc19
Description
mucin 19 [Source:MGI Symbol;Acc:MGI:2676278]
Coordinates
chr15:91715498-91716692:+
Coord C1 exon
chr15:91715498-91715647
Coord A exon
chr15:91715648-91716597
Coord C2 exon
chr15:91716598-91716692
Length
950 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTCTGTCTATTTTCTTCCAGAGA
3' ss Score
9.97
Exon sequences
Seq C1 exon
GTCTTTGTGGTTCCTTCAACAATAAGGCAGAAGATGATTTCATGTCAAGTCAGAACATTTTGGAGAGCACAGCTCAGGCATTTGCTAACTCCTGGGAGATGATGCCTTGCTCTGAGGGAAGCCCCTCTTCCTGTGTCAGCATTGAAACAG
Seq A exon
GTGAGAGCCATTGAGCGTCAAACTGGCGTTAAAAGTTGGTGCTGGTACTTGCAGACTTGTGCCGATAATCGTAAGAACACAGCCAATCCCCTTGCCTCTAGCTAGTATTTGTTATACTGACCCAGTTTTAGAAGACAAGGACTTCACTTATTTTCATTTTTATATGGAAACAGTGTTTAGGAGAAATGTTAGCTGGATTGGTAGAAGATGACAGCTGGCGTGAAGATTTTACCTTTGAGTGCACTCTATGTCCACTGTTGTATTAAACTTTTTTTTTAATTTATTTTTTTTAGTTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCCAGACCCTCCCTCCCTCCCCCCCCCCGGCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCCATACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCACTAGGCCATCTTCTGCTACATATACAGCTAGAGACATGAGCTCCGGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGAGTTGCAAACCCCTTTAGCTCCTTGTGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATAGCTGACTGTGAGCATCCACTTCTCTGTTTGCCAGGCCCTGGCATAGCCTCACAAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGTATATGCAATGGTGTTAGCGTTTGCAGGCTGATTATGGGATGGATCCCTGGGTATGGCAGTCTCTAGTTGGTCCATCCTTTCGTAAACTTAATGACACTGAATTTGATCCATCACAGCAAACTACTGTGAGAGGAAAAACTCTGCATGGAGGCAGAACTGTCTGAAGTACACAGCTTTCTTTTAAGTTCAAGAAACTTAGATGTTGCTGAGACTAACTCTGTCTATTTTCTTCCAG
Seq C2 exon
AGAAGTTTGCTGAAAGTAACTGTGAGATTCTTCTCAGTTCAAGTGGGCCTTTTGCTGCTTGTCATCAGACTGTGAACCCCAAATTCTATCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075464-Muc19:NM_207243:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTTCCTTCAACAATAAGGCA
R:
TCATGATAGAATTTGGGGTTCACAGT
Band lengths:
239-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: