MmuINT0102371 @ mm9
Intron Retention
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:148880420-148880861:+
Coord C1 exon
chr7:148880420-148880558
Coord A exon
chr7:148880559-148880750
Coord C2 exon
chr7:148880751-148880861
Length
192 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CACCACCCTTTCTCATACAGAGC
3' ss Score
8.19
Exon sequences
Seq C1 exon
TGTCTGCAATGCTGGTCGCTGGGTGTGTAAAGACCTGCCTTGCCCTGAGACCTGTGCCCTGGAAGGTGGCTCCCACATCACCACCTTTGATGGGAAAAAGTTTACCTTTCATGGGGACTGCTACTATGTCCTGACCAAG
Seq A exon
GTAGGCCAGCCAGGAACCTGGATGGAGCTGGGGACCCTCTGTCTTCCAGGGAGGGTGGAAAAAATGATTCTGGAGAAGGCTGTCCTTGGGGTGGTGGGTAATGCTGTTCTTAGAAATGGGTTGGAAAGTGAGGGGTCTAGGGTGCAGGAGGCTGTCAGAGCCTCAGTAACTTCACCACCCTTTCTCATACAG
Seq C2 exon
AGCGAACACAATGACTCCTATGCCCTCCTGGGGGAGCTGGCCTCCTGCGGCTCTACAGACAAGCAGACCTGCCTGAAGACTGTCGTGCTGTTGACTGACGACAAGAAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515-Muc2:NM_023566:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(65.6=85.1),PF0009420=VWD=PU(18.1=59.6)
A:
NA
C2:
PF0009420=VWD=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCAATGCTGGTCGCT
R:
TTGTCGTCAGTCAACAGCACG
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: