MmuINT0102441 @ mm9
Intron Retention
Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:149003934-149005040:+
Coord C1 exon
chr7:149003934-149004042
Coord A exon
chr7:149004043-149004508
Coord C2 exon
chr7:149004509-149005040
Length
466 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
CTGAGCAGATCTACCCACAGGTA
3' ss Score
4.54
Exon sequences
Seq C1 exon
AATGTACGGTGCACCAAAGACAGCAGATCATCCGTCAGCAAAACTGCAGCTCTGAGGGCCCAGTGAGCATCTCCTACTGCCAAGGCAACTGCGGGGACAGCATCTCCAT
Seq A exon
GTATGTATGGGCCCCAGAGAGCCCAGGGAGTATTCAGAGATGGAGTTGGCGGCAGGGGTGGGATGGGGTGCAGGGCAGACAGGCAGAACCAGGAGGGTGAGAAAGAGGGTTCAGAGCTTCTAGACTGTTACTGATAACTCATGGATTCCAAGGTAGCATCCACAGGGTTCCAAGCTCCTTGGGCAGTACTGACTACTTTTAAAGCGGAACGTTTGTGGAAGTATCTCATCCAAGGGACTCAGCAGGGACCTGCTGGGCACCCAACTGTGGACTTAGGACACCTGGTGGCCAAGGGCAGCTGTAGCAGAAACAGTTGCCCCAGGGCAACTGGCAAATAAGCTGATAGGGTCTTGAACAAGGGTGACAAGGACCTCAGGAGCTTGGCACCGTGCCAGCTGGACACAGAACCTGTGGCATACTCAGGCAGCTCCCAGCAAGGCTGGGTGCTGAGCAGATCTACCCACAG
Seq C2 exon
GTACTCCCTGGAGGCCAACAAGGTAGAGCACACATGTGAGTGTTGCCAGGAGCTGCAAACCTCTCAGAGGAATGTGACTCTGCGCTGCGATGATGGCTCCAGTCAGACCTTCAGCTACACCCAGGTTGAGAAGTGTGGCTGCCTGGGCCAGCAGTGCCATGCTTTAGGGGACACAAGCCATGCAGAGTCCTCAGAACAAGAGTTCAAGTCCAAGGAAAGTGAGGAACATGGCCAGCAGTTGGCATTCAGGGTCAGCGAGGACATGCTTGGGCCTTTCCAGTAAACTGAATACTGCTGCTGTCCCAACCAAAAGGTCCTCCCGAGGCCAGAAAGTGGCTTGAATTCTACCTACCTGCCGCTTCCTCTTCAAGAGGGACATCGACCCCAGATGGTCTTGGAGGTAGGAGAGGCCCCTCTCCACTGATTAGGTGGAGACATGGTGGTCTCGGGCTCCTTTTGAAAGAACTTCATGATCACCCAAGGGTCCCATGAATGACAGTCACTTGGATGCAGGTATCATCTGCTTGGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974-Muc5ac:NM_010844:49
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.223
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACGGTGCACCAAAGACAG
R:
GCTGGCCATGTTCCTCACTTT
Band lengths:
343-809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: