MmuINT0102482 @ mm9
Intron Retention
Gene
ENSMUSG00000066108 | Muc5b
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:149055157-149055763:+
Coord C1 exon
chr7:149055157-149055337
Coord A exon
chr7:149055338-149055658
Coord C2 exon
chr7:149055659-149055763
Length
321 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
ACAGAACTTCCTCTCAACAGTTT
3' ss Score
5.77
Exon sequences
Seq C1 exon
CCTGGAGAACACTGGATCAGCAACTGTCAGGCCTGTGTATGTGAGCCCGGCTCTGTGTCGGTACAGTGTGAGCCAGTGAAGTGTGAGAGCCAGGATAAACCCCCACAGTGCACAGAAGCTGGCTTTGTGACTGTGACCTGGCCCAGTGCTGACAATCCATGCTGCCCCGAGACACTGTGTG
Seq A exon
GTGAGCATCCTGGGGACATAGAAGAGTCTCACTCTAGCTTAGCTGCACTGGGCCATGTGAGAGGTGGGGGATGAGCTCAAGATGCTTCAGTTTTTCACCTAAAAATGAAGCTGGCGACTCTGGTCTGAGCTAACAAAGCAGAGAGTTGGTGAGGACCAAGAGGGTCAAAGACTGAGGGGATTTGTTGAAACCCAGAAAAACCATGAAGCACACTAGGTACCGGGGGTGGGGAATGACACCAGAGGCCAGTGTTTCCAGAAAGGAAGAAGACGGGAGGGGTGGCTAAATGGGCAGTGTCCTGACAGAACTTCCTCTCAACAG
Seq C2 exon
TTTGCAATTCAACCACCTGCCCCAAGAGCCTGCCCACGTGTGAGCCAGGATATGAGCTGGTCCAGACCCATGAGAATAGCAGCTGCTGCCCCAGCTACAGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108-Muc5b:NM_028801:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGAACACTGGATCAGC
R:
GCAGCTGCTATTCTCATGGGT
Band lengths:
267-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: