MmuINT0102515 @ mm9
Intron Retention
Gene
ENSMUSG00000048191 | Muc6
Description
mucin 6, gastric [Source:MGI Symbol;Acc:MGI:2663233]
Coordinates
chr7:148828029-148828640:-
Coord C1 exon
chr7:148828605-148828640
Coord A exon
chr7:148828209-148828604
Coord C2 exon
chr7:148828029-148828208
Length
396 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
CTCACATTTGCTCTACACAGGTT
3' ss Score
8.31
Exon sequences
Seq C1 exon
CACCACCCACTACCACACTACCGCCAACCACCACAG
Seq A exon
GTGATTGCTCACCCACTTGGTACCACAGGATGAAGGCTTCTTGCCCAGGGCTCACCCTAGCTCCAGTGGACAGCCCTCCCCACCCCACCAGTCCAGCTTCTACATCTACCAGGCCCTGGGAGGGTGGGTAATGTACCATGAAGTCCTAGGCCACAAGGTCAAGAACATACAAAGCTTAGCTACTGGTCAGCCATTGATTCTGGCCACTTGACTCACTTGACTGAGCAGGAAGCAGGGCCTCACCAGGTAAGACTACCAGGAATCCATGCTGCCTTCATAGGTTCCTGAGCCACCCTCTACCTTTTGCCTAGCCCCTCAGCAGGCAGATCTGTCTCTCCCTGAGGGGCTCTAGAGCCAGATTCTGCCCATCCATGAGCTCACATTTGCTCTACACAG
Seq C2 exon
GTTCACAGCCTACCACGGAAACCACCATCAGCACTGAGTTTCACAGTTCCACCTCTGCAAACACACCTGTGGCCCCCTCCTACCTGCCAGGTCTTCCGACCCCACCACCTTCAGCCCCATCCTCCACTGAGGAACTAACAGTCTGGACCACCCCCAAGGAATCCACAGTCTCCTCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048191-Muc6:NM_181729:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCCACTACCACACTACC
R:
TCCCGAGGAGACTGTGGATTC
Band lengths:
214-610
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: