Special

MmuINT0102571 @ mm9

Intron Retention

Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121806564-121807515:+
Coord C1 exon
chr6:121806564-121806673
Coord A exon
chr6:121806674-121807353
Coord C2 exon
chr6:121807354-121807515
Length
680 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
TTCTTCCTTGTTCAACTTAGGTC
3' ss Score
8.81
Exon sequences
Seq C1 exon
GATTGGAGTTCAGTCGATCTGGAACAACTAAAATTGAAAGAATCACAAACAAGCTCATATTTCTGAAGGCAGATTCACACTTCAGACATGGAATTCCATTCTTTGTGAAA
Seq A exon
GTAAGGTACTTTTTGGTTCATAGCTGGTTTAGCTGTAGAGTGGCACTTCAAAACCAAAGCCATTCTGCTAGATATTAGGCGTGTCTGATATCATTGATTGCAACACAAGAAGTGCAGCTTAGGGGTGGAGTGTATGTTTCTTATGCCCAAGTATATGAGTTCAATTTTCAGAACTAAACTGAAGACTTAGGTTATCTGGAGGCTCCAAATCGAAAACATCTGCTGCAAAATTTTTATTTATAAATACATTTCCTGAAAACCTTACACCCCAAAGTGTCACTGTGTTTCAATGGTGAAGCAGCATATGCTACATACTCATAACAGATCCACACTCTCCATTAGCCTCTGTGCCCTCACAAGTTGTTCTTGTGATATTGACAGAGCATCTGCTTCCCGTACTTTACACAAAGGAGTCAATGATGGTTTCTTATGAATAATAAGAAAGTAGAAAGCATCTATAAAGCATCTGTTATGGTGTTAAGAGTATGATACCTGCAGTCTCTATACTTTCACAACACAGATAGTGCTGCTGGTATGGATTTTCTGGAACCAATTTTTGCATTGCTGAATTTTTTGGTGCATCTTTGGAATCTTCATATAACACTGAAACAGTGTTTTCTGTTACATTCTTTGTCATATTTCCATGCCTAGGCTATACTTTTCTTCCTTGTTCAACTTAG
Seq C2 exon
GTCCGCCTAGTGGATATCAAGGGAGACCCTATCCCAAATGAGAAAGTCTTCATCAAAGCACAAGAACTTAGCTATACCAGTGCTACTACCACTGATCAGCATGGCCTGGCAGAGTTCTCCATAGATACCACATGCATCTCGGGCTCTTCCCTCCATATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.054 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0236911=Big_1=PU(7.4=13.5)

							
A:
NA

							
C2:
PF0236911=Big_1=FE(77.9=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000032228





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
chr12:9194239-9196329 
HsaINT0135661
(PZP)
Human
(hg19)
chr12:9346835-9348925 
HsaINT0135661
(PZP)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:101309968-101312150 
LOW PSI
BtaINT0010508
(A2M)
Chicken
(galGal4)
chr1:75691090-75691545 
ALTERNATIVE
GgaINT0103688
([1])
Chicken
(galGal3)
chr1:79486280-79486964 
LOW PSI
GgaINT0105024
([2])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TTGGAGTTCAGTCGATCTGGA

				
R: 
TTTGATATGGAGGGAAGAGCC

				
Band lengths: 
270-950

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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