MmuINT0102594 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121834580-121835912:+
Coord C1 exon
chr6:121834580-121834707
Coord A exon
chr6:121834708-121835821
Coord C2 exon
chr6:121835822-121835912
Length
1114 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TCCATTTCTTTGGTCTATAGTTA
3' ss Score
5.76
Exon sequences
Seq C1 exon
ACTATGCTGAGATACAACATGCACTTGGAGAAGCAGCTGTCTGCATTTGCTATATGGGTACAGACAGTACCTCTAACTTGTAATAACCCCAAAGGCCACAACAGCTTCCAGATCTCACTAGAAATCAG
Seq A exon
GTATGAGATAGGCATGTGTGTCTGTCTCTGTGTGAATCTCTTTCTCTGTCTCTGTATGAGCATCTGTCTCTGTCTATGTATGAACATCTGTCTCTGTCTCTCAGTTACTATCAGGCTGTCTTTCTAGACCTCTTCATGTAACAGATTCAAAGATATCTAAAGTGAGTCTCTTCATTATAATTTTGTTTTAACTGTAAAAAAAATTAAGAATACTGGACTTCAAAGTAAACAATGAAGAATTGTACTTTTATGATTTCTAATTAGTATACTTTTAGGATTCTTTTCTTGCCCACTATCATAATAAAATAATATGTTATTCTTTTCCAAGAGACCTTAACATACATTATTCTTCTTCACCAACAAAGAAGAGCCTTCCTGGTCTTTTAAGATTCCATTTTTCTAGAAGAAAAAAGATATTCAGTTCTTCTGGCACTTGTGAAAATCTTTGTGCAAAATATAACCAGCAACTGGGTCTGACTGCAGAAACCATAGGGATCTTGGATGGAAAGAAGGCATCCACATCCACAGAGTGATTTATCATCATACTTACGCAAGTGTGTGTGTGTGCGTGTGTGTGCATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTGCGGGTGTATGTGTGTGAGTGTGTGCATGTGTGCATGTGCTTGTGCGTGTGTGTGCGTGTATGTGTGTGTGTGAGTGTGTGTGCTTGTGTGCGTGTGTGGAAGTGTGCGTGTGTGTGTGTGTGTGTATGAGTGTATGTGTGTGAGTGTGTGTGTAGGAGTGGGGGGTGTATGTGTGCCAGCACATGTGTGTATGGCAAAGAACAATGTCAGCCATCAGCCCTCTGGTTCCATACATACTTCTTTTAGATATGAGGTCTCTTACTGGTTAAGCAGATGCTGCTGGTAAGCCAGCATGCTTGACAGTCACAGCCATTTTAATGCACTCTCCAGATGATATTGTTATGCACTCTATTTATATTAATAGTAAAGGCCATGTATTATAAAGTATGGAAAAATCCCACAGGCTATATCAGGAATTACTGCTGGGCCTTAAAAAAGACAAGATTGAAACTATTAAGATGACTCCTTTTGTCCATTTCTTTGGTCTATAG
Seq C2 exon
TTACACAGGCAGCCGGCCAGCCTCCAACATGGTGATTGCTGATGTGAAGATGCTATCTGGTTTCATCCCATTGAAACCAACAGTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076779=A2M_recep=PU(25.0=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGCTGAGATACAACATGCACT
R:
TCACTGTTGGTTTCAATGGGA
Band lengths:
214-1328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: