Special

MmuINT0102595 @ mm9

Intron Retention

Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121835822-121836631:+
Coord C1 exon
chr6:121835822-121835912
Coord A exon
chr6:121835913-121836562
Coord C2 exon
chr6:121836563-121836631
Length
650 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
GGGTTTTCTCTCATTTTCAGCTT
3' ss Score
10.11
Exon sequences
Seq C1 exon
TTACACAGGCAGCCGGCCAGCCTCCAACATGGTGATTGCTGATGTGAAGATGCTATCTGGTTTCATCCCATTGAAACCAACAGTGAAAAAG
Seq A exon
GTAAACAGAGATGGGATGTTTGGATTCTCTATATCCGCAGATTAGGAGCCTGCCAACACCATCAGAATTATGCCAACCCATCCATGTCAAAGCAATGTTAGCATTAATTTAACACACTTGGATGGTGTTAAAATGCTGATATTTTTATGGATGGTGATAGCAGCCAGCACAAGAAATATGAGAAAGTTCTCTGAATTCATTGAGTCCACAATATAGCTAACAATAACTTTTAAAGTGTAATGATCCTGGTCAGTAGTGATTCAGAGGAAAATATTATTAAACATCAGAATTTTAGGTGTAGTTTTAAATGTTTGAAGAACTATGAAAATTAACAATAAGCTAAAGGCAATATCAGAGCAGAGAATATTGGGTAAGTACTACCAAATAGGTGACAATTTTATGTTCAAATGAAGTAAAAAAATACCTACTACTACATCAGATCATATTCAGTTGGGCCTTTAGTAGAGTAGCATTCACAATTTTCAAAATATATTTTCATTCTTATTGGAAATGTTTCTTCGGGTTCATTAAAATGAATTCAATAACATCACCTTTCTAACACCTTTACTTCAACAGTTCATTTGCCTCTCTCACTCGCCCTCCAAGGCCTTTGCTTTTTCATTAACATGGGGGTTTTCTCTCATTTTCAG
Seq C2 exon
CTTGAAAGATTAGAGCACGTGAGCAGAACAGAAGTGAGCAACAACAATGTCTTAATATATTTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.043
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF076779=A2M_recep=PU(25.0=71.0)

							
A:
NA

							
C2:
PF076779=A2M_recep=FE(25.0=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000032228





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
chr12:9151673-9152219 
ALTERNATIVE
HsaINT0135685
(PZP)
Human
(hg19)
chr12:9304269-9304815 
ALTERNATIVE
HsaINT0135685
(PZP)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:101263368-101264577 
LOW PSI
BtaINT0007465
([1])
Chicken
(galGal4)
chr1:75820041-75822314 
LOW PSI
GgaINT0105046
([2])
Chicken
(galGal3)
chr1:79459378-79464010 
LOW PSI
GgaINT0105046
([3])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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