MmuINT0103427 @ mm9
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67001810-67002340:+
Coord C1 exon
chr11:67001810-67002052
Coord A exon
chr11:67002053-67002163
Coord C2 exon
chr11:67002164-67002340
Length
111 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
AAGCACGTTTGCTTCCCAAGGTG
3' ss Score
4.56
Exon sequences
Seq C1 exon
GAAGCTGAAGGCTTGGCCGATGCAGAGGAGCGATGCGACCAGCTGATCAAAACCAAAATCCAGCTGGAGGCCAAAATCAAAGAGGTGACCGAGAGGGCCGAGGATGAGGAGGAGATCAACGCAGAGCTCACGGCCAAGAAGAGGAAGCTGGAGGACGAGTGCTCAGAGCTGAAGAAGGACATCGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAGCACGCCACGGAGAACAAG
Seq A exon
GTATGAGACGTCTACACGGGAAGCTTATGACTCATTTTAATGAAGAAGTAAGACATAAAACCAAAGCTATTAAGACCTAACGTTTAATGCAAAGCACGTTTGCTTCCCAAG
Seq C2 exon
GTGAAAAACCTGACAGAGGAGATGGCAGGCCTGGACGAAACCATCGCCAAGCTGACCAAGGAGAAGAAGGCCCTCCAGGAGGCCCACCAGCAGACCCTGGATGACCTGCAGGCAGAGGAGGACAAAGTCAACACCCTGACCAAAGCCAAAATCAAGCTGGAACAGCAAGTGGATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-Myh2:NM_001039545:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.593
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(41.9=100),PF135141=AAA_27=FE(10.8=100),PF0157614=Myosin_tail_1=PU(28.6=49.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(28.8=93.2),PF135141=AAA_27=FE(7.9=100),PF0157614=Myosin_tail_1=FE(41.4=100),PF0003816=Filament=PU(6.4=30.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGGAGGCCAAAATCAA
R:
GCCTTCTTCTCCTTGGTCAGC
Band lengths:
255-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: