MmuINT0103435 @ mm9

Intron Retention

Gene

ENSMUSG00000033196 | Myh2

Description

myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]

Coordinates

chr11:67005101-67006088:+

Coord C1 exon

chr11:67005101-67005297

Coord A exon

chr11:67005298-67005904

Coord C2 exon

chr11:67005905-67006088

Length

607 bp

Sequences

Splice sites

5' ss Seq

CAAGTATGT

5' ss Score

7.44

3' ss Seq

AACTTCATGTAATCTTCAAGGAA

3' ss Score

4.45

Exon sequences

Seq C1 exon

GCCAAGAACGCGCTGGCCCACGCCCTGCAGTCCTCCCGCCATGACTGTGACCTGCTGCGGGAACAGTACGAGGAGGAGCAGGAGTCTAAGGCTGAACTGCAGAGGGCGCTGTCCAAGGCCAACAGCGAGGTGGCCCAGTGGAGGACCAAATATGAGACGGATGCCATCCAGCGCACGGAGGAGCTGGAGGAAGCCAA

Seq A exon

GTATGTGGGAAAGAATGTGCAGAAAACTTTACATATCCATGCCACATCATTGTGGATTAGCTTCTGTCTTCTAGACTACCGTAATAATCCCCCAGTAAAATGAACATATCCCTGACCTCCTGCTGACTTAAAATCCAGTTAAGGTAACAAACAATTGAGAATTCCAGAGCCTGCTGCTCTTTGCCAAATGTCCCAAGCTCATTGCTACCTGTGCACTGGCTGCTCCATCTCTACACAACAGTCCCTTTTGGTCTCCCACTAGTTCACTCTGTCTTCTTAGCAAGACCTTCCCTAAATAGCTAGAGTTCTCACCCACAAATCACCACATTTTATTACTCCTCACTGCATTCATATCTGAAGGGTGTTCTTAAGCAACTGCAGACTTGACTGTTGTTGATGTCTCTCTCTTGTCTGAGCTACATGAAGCAGGCGGCATTTGTCTTGTTCACCGCTGTGTATTCATGATGTCTGGTTCTAAGAGGACCCTAGTGAATCTTGTCATGTGAATGAATGACATCACTATGAAGTTTTCGATATTCTTCAATGTGATGATAGTTCATATCTTTAATATGGTTTCTTCTTCCTAAAACTTCATGTAATCTTCAAG

Seq C2 exon

GAAGAAGCTGGCTCAGCGTCTGCAGGCGGCTGAGGAGCACGTAGAAGCCGTGAACGCCAAGTGCGCTTCTCTGGAGAAGACGAAGCAGCGGCTGCAGAACGAGGTGGAGGACCTCATGCTGGATGTGGAGAGGACCAACGCTGCTTGTGCCGCCCTGGACAAGAAGCAGAGAAACTTCGACAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000033196-Myh2:NM_001039545:30

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=0.385 A=NA C2=0.194

Domain overlap (PFAM):

C1:

PF135141=AAA_27=FE(8.8=100),PF0157614=Myosin_tail_1=FE(12.6=100),PF0003816=Filament=PD(30.9=43.9),PF0003816=Filament=FE(23.0=100)

A:

NA

C2:

PF135141=AAA_27=FE(8.3=100),PF0157614=Myosin_tail_1=FE(11.9=100),PF0003816=Filament=FE(21.6=100),PF045827=Reo_sigmaC=PU(37.9=93.5),PF060097=Laminin_II=PU(28.7=46.8)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000018641