MmuINT0103508 @ mm9
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67066475-67067045:+
Coord C1 exon
chr11:67066475-67066565
Coord A exon
chr11:67066566-67066655
Coord C2 exon
chr11:67066656-67067045
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
GTCTTTTCCACCACCTCCAGGCC
3' ss Score
8.73
Exon sequences
Seq C1 exon
GAAAGAGTTTGAAATGAGCAATCTGCAGAGCAAGATTGAGGACGAGCAGGCCCTCGGCATGCAGCTGCAGAAGAAGATCAAGGAGTTGCAG
Seq A exon
GTACATCCATATCTTCTATCCGTCTAATTCATCAGTAAACGAAAAATGATTGACCCAAGAAGCTGAGTTGGTCTTTTCCACCACCTCCAG
Seq C2 exon
GCCCGCATCGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCTAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCTGGCGGAGCCACTTCAGCCCAGATCGAGATGAACAAGAAGAGAGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACGCTGCAGCATGAAGCCACAGCAGCCGCTCTTCGGAAGAAGCACGCGGACAGCGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAGCGGGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGCTGAAGATGGAGATCGATGATCTCGCTAGTAACATGGAGACAGTCTCCAAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-Myh4:NM_010855:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=NA C2=0.923
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=FE(25.9=100),PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF087025=Fib_alpha=PD(14.7=13.1),PF0157614=Myosin_tail_1=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGCAAGATTGAGGACG
R:
CTCTCGCTGATCTCCTCCAGT
Band lengths:
178-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: