MmuINT0103553 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55565751-55567042:-
Coord C1 exon
chr14:55566918-55567042
Coord A exon
chr14:55566060-55566917
Coord C2 exon
chr14:55565751-55566059
Length
858 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GACTCCTCTCCGCTTTCCAGGCC
3' ss Score
8.95
Exon sequences
Seq C1 exon
AGGAGATCTCAGACCTGACTGAACAGCTGGGAGAAGGGGGGAAAAACGTGCACGAGCTGGAGAAGATCCGCAAACAGCTGGAGGTGGAGAAGCTGGAGCTGCAGTCAGCCCTGGAGGAGGCTGAG
Seq A exon
GTAAGGGCCTAACTAGGCACTCTCCAGCCTGTCCTGCTGTATCCTGTCTTACCGCCTCACAGAAGTCACCCTGACCCCAGGACACAAATCTATTGGCTCCCATTCTTAGTAGACAGTCACCATGGGTATTCTTAGATACCCAGGAACAATGACTTCCCCCAAAGTTGAGTTCCTCACATTGTACAATGCCACAGTCTGGTTTGTAGGACAGAAGGCTTGCTTGCTTCCTGGCTGGAATCGGGCTATCATAATATCAGCTCAAACCACTGGGTAGGAACACAGGCTCCAGGGTCAAATGACCTAGGTTTGAACCCTGTCTTGAGACCCTCTGTGTGCCTTGCTGCCCTCATCTATAAGATGGAATTAATGTATAAACCTCATAGGATTATGTATATGATAATTATGAAGACTGAGTAAAATAACACAGTCAAGCACTTACTAGCCATGCTTGCTGCGCATTTCTAAGAACTTGGGACAGCCCGGGATTAGGGCTATAGACACTTCAACCTTTACTGTGATTTTTTGTTTTTAGTCAGATGGGTCAGGAACTCCTGCTATGTTAGTCCCAAAGGCCTGATGACTGAGAAGTCTTAATTCGGCTGTAGAGATGGCTCAACCATTAAAGGCTAGGCTCACAATGAAAAATATAAGAGAAGTCCTAATCCTCTCCTTTATAGAGGAAGATCCAGGAGTCAGGCCCTGGAGGCTCAGCACTTTCTCTCCCACAGTCGTCTAGGTACAGGACCTATCACCACAGCACCTTCCTAGGCCACAGTCCTAGTCTGCCATCCTCTCCTTCTCCATACCCAACCCAAGTCAGCCTTAGTTACCCACCTCTGACTCCTCTCCGCTTTCCAG
Seq C2 exon
GCCTCCCTGGAGCACGAGGAGGGCAAGATCCTCCGTGCCCAGCTGGAGTTCAACCAGATCAAGGCAGAGATCGAAAGGAAGCTGGCAGAGAAGGATGAGGAGATGGAGCAGGCCAAGCGCAACCACCTGCGGATGGTGGACTCCCTGCAGACCTCCCTGGATGCGGAGACACGCAGCCGCAATGAGGCCCTGCGGGTGAAGAAGAAGATGGAGGGCGACCTCAACGAGATGGAGATCCAGCTCAGCCAGGCCAATAGAATAGCCTCAGAGGCACAGAAACACCTGAAGAATTCTCAAGCTCACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=0.767
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(26.6=90.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCCGCAAACAGCTGGAG
R:
GGTGTTTCTGTGCCTCTGAGG
Band lengths:
346-1204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: