MmuINT0109818 @ mm9
Intron Retention
Gene
ENSMUSG00000038146 | Notch3
Description
Notch gene homolog 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:99460]
Coordinates
chr17:32261227-32269294:-
Coord C1 exon
chr17:32269147-32269294
Coord A exon
chr17:32261325-32269146
Coord C2 exon
chr17:32261227-32261324
Length
7822 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TGATGTTTATCTCCTTACAGGGA
3' ss Score
9.96
Exon sequences
Seq C1 exon
ATTCTCATCAGGAACCGCTCCACTGACCTGGATGCCCGAATGGCAGATGGCTCTACTGCACTGATCCTGGCAGCCCGCCTGGCAGTGGAGGGCATGGTGGAAGAGCTCATCGCCAGCCATGCCGATGTCAATGCAGTGGATGAGCTTG
Seq A exon
GTAAGTGCTGCGGAGGGGATGGGGAGGGGCTGTGGTGCCACTGCCCTCTTAATGTGAAGTCACACCTACGTTGACAGCAAGGTGTGCACGCCAGGGCTCCCAAACGGATGGAACAGGACCCACAGAGTGTTCTGGTTCAGAAAAGATGTAGACTCCCTTCTCCTCCCCTCCCTTCCCTTTTTCTTCCACTCCCTTCCTTTCCCCTCCCCCATCTCCTAGACCCCATCCCCCACTTTCACATTATGATACTCCTCTTCCTCCCCTTCCTCCCGGGCTTCCTTCTAGAGTCCAAATCGTTGATCAAACCCAAAGTGCTTGTCTTTGAGTCTGACTTATTTCACTTACTGTGATGATCTCCAGTTCTATTCATTTCTTGAAGATTGTTTAATTTGGCTCCCCCGACTTTTGAGACAGGGTCTCATGCAAGCTAGGCTCGCCTCCAACTTACTGTGTAGTCAACGACCTTGAAATCTGGACCCTCCTGCCTCTGTTTCCCAAGTTAGGCATTCGTCATCACATCCAGCCCAATTTCTTTCTTTGTTTTGGTTGAGTAGCATTCTGTTGTATGCAGTGTGGGTGGGCACCTAGGCTGAGCAACTCCATTGTATGCAGTGTGGGTGGGCACTTAGGCTGACTCCATAGTGTACCGGCTTCGAATAGCAATGTGGATGCCACAGTTCGCATGGGCATGCAGACATCTCTTATTGTATGCTGACTCAGCCCTCAAGTATAGACCCAGGGGCACAGGAGTGCCATACCTGAACCTAGGGTAGTTCTTTTTTTTTTTTTTTAAGAATTATTTATTTATTATATGCAAGTACACTGTAGCTGTCTTCACACACTCTAGAAGAGCGCGTCAGATCTCATTACGGATGGTTGTGAGCCATCATGTGGTTGCTAGGATTTGAACTCAGGACCTTTGGAAGAGCAGTTACTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCTAGGGTAGTTCTACATTTAGTTTTTTGAGGACCCTCCATAGCATTCTCTATACTTACTACTTAGCATACTTAGTTACTTTATCATTAATAGGGCATGAAGATCCCTTTCTCTAGTGTTTGTATTCTTTCTTTCTTTTTCCCTTTTTTGGCTGTTTTCATGATTGAAGCCATTCTGGTAGCATCTAAGTACAGTTTTTGTCTGTTTTTATTTTTTTGTTTTGTTTTGTTTTCAGACAGGGTTACTCTGTGTAGCCCTGGCTGGCCATGGAACTCACACTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATCAAAGGCCGGGATCACCACCACGCCCGGCTGAGACCCTCTTTTTCTGCCAGGCACAGAAAGGCCACCTTTTGCCTTCCTGCCCAGCTATAGGCTATTCAGCTCTTTATTTAACCAATCAGGAGACGATGGAGAACATTGTTTTACAAAATACCAAGTTAGACCAAAGTCTGGACTGTAACCAGATCTCTGGGAACAGAAATCAGCATCTGAATACACAGTGCACAAAACCACCCCCCAACGGGACTTCATCGCCAACTGGGGGTAAACGCTCATGCTTTGCCCACACTGACCAAGCACACGAGCTTGCTTCTTAGTGTGCTGTCTAGATGCTTTGTTAAGGAAACGGACTCTCCTGCTACCTGCTAGACAGTGGGATAAACTTGCATGTGGTGATCTGTGGGGGCAGCTGCCTGGTAGTGGCCTGCTTGGCTTGGGTATGTCATGAGCAAGGGTCACAGCAAGGGTTCTTGTATTCACAGGCCGCACAGCTGTAGACACTCTAAGACACTTACACACATTTGTTTGACGTACCCTTGGTTCTCAACTTCATCAGCATTGACATCTATGGTTGGGTAATTCTTGGTCTGCGTGTTGGATGAAGGTCTGGGCTGTGCACTCCGGCCTGTGGGGCAGCATCCCACCAGGAGCATCCCATCTCTACAATGTTACTGAGTATAGTGGGCTTCTTCCCTGGGTGGGCCTTTGTTTCAACAACAAAAGGATTTAGAAATGGTCTCAGAAGGAAGCTCAAACACAGTTAGACTAGAGTTTGATAGCAAAGCAACAGATCAAGCAAGCTGTCAGTCTCTCTGGAATAGAGAGATGGAGAAGATGCATTCATGTCTTTTGAGCTGTGGCTGGAAAGCCGCAGCCTGGTGGGAGCTGGGGGAGAGGTGAGCTTCCGAGGACAAGTGCGAGCTCATGTCCTGGCTTTAGCCAGGATCTGAAAGAAAAGGAATTGAGAAGAAAGAAAAGGGGTGCGGTGGCCAATGCATTTGCTATGCCAGGGCGAAGACCTGAGTTTGGATCTTCAGAAACCTATGTAAATGCTAAGTGGGTGTGATGGCCACCTGTAATTCCAGACACACACACACACACACACACACACACACACACATACCCCATGTATACACAGAAAAAGAAAAAAATATTCAGAAAAGCTGGCAGGGTGCATAATGGTGGCTCCAATGTGCTGCCTGCCTGATGGATGTCCTGCAAGTAGCTGCTTTGAGGGAGAGGCTCCTAGGAAGGGAAAATACAATATGTCATTAAGGGGATAATTAGTCCTTCCCTGTCAATAGCATGTCTTTAGGTGACTCAGAGTTTTTGGCGGGACAAAGGCAGACTCTTGGACAGATAATTGACAGACTCTATTGGGATACCTTTAAAAATAGTCTATTTATGTTTACTTTATGTGTAGGGTGTTTCGCCTGCATGTATGTCTGTGCACCCCGTGCATGCAGTGCCCACACAGGCCAGAAGAGGAGAGGGCATCAGATCCTCTGGAACTGGAGTTACAGACCGTTGTGAACTGTTATGTGGGTGCTGGGAACTGAACCTGGGTCTTCTAGAAGATCAGCCAGTACTCTTAACCACTGAACCATCTCCCAGCTCCCCGAATTAACTCTTAAAAGGAGACAGTCATAAGTAGCATGTTGGGTTCCACCAAGGATTGGAACTAGAACTCAGATTCTATTTAAGAAGCAGCTTTGCATTAAGTGGGCCTCAACAAACTCAGACACTCCCAGCTTTTTATGGCAAGTTGATGTCTCTCCTAAGTAGTCTTAGTCCTGTAAGACTACTGTAACAGGCAAATGACCTGGGGGTGGGGGTGGGGGGAGGGCAGTCATTCATGGTTGATATTAGCTAACTTTTAAAAGGCAACAATAGAGGGGCCAAAGGTAGAGAGAAAAAGACTTGATTGTGGATGCCAAAATGCCTACAGGGGAAGATGGGATGTGCCTCTTATAAGGGAGGACTCCTGTAGTCCACAAGGAAAGCTGGGAAGTGTAGTCCTTCAGCAGGAAACTCGGTCCCAATTCTGAGAGGATATTAAAAAGACGCAGGGCAGGATGTCATAGCTTTTTCTTTTCTTTCCCCGGAGGAGAGTCTTTATCAGAGGGGTTAGTTCTGGGTCCAGTAAAGGGAAACTCTCTGGCCATGTTGTATGCTAGAGTCTTGATTAGCTGTGATGGATCAGGCCATTGTCATTCCGCATTCCTGAGGAGAGCTGGGAAAATATTTATTAGAAGGCCACAAGCAGATGATTTGGTTATAGAGTAGAGCTGAGAGATTTTCTGGGAAGGTTGAGGGAGGGGGAGGAGCAGGAGCCTAGGCAGAAGAGACAAGAGTGAGACAAAGTGGGCAGAGGCTGGTCCCAGGGTGACAGTGACTGGTCCCATTGCCAGGACTGCTAGAAAAATGAGCTAGCAGAAGCAGCAGAGGGCTACAAAGCAGCAGAGGACGGGAAGAGGGGTCAATAAAGGGTTAATGTGAAGAACTGTATCTGGCCTGTGGTGGAAGAGATCACGGTCCCTTTTCTATTCAGCACCTAAACAATTGTTGTTTAGGTGCTGAATAGAAATTGTTGTTGTTTCTCAGATGTGTCAGGAACAAATGGAGCTGTTGTGGGATGAGAGCCACTGAGAGAGCTCGAATGGGAAATTCTGCGTGGGTTCAGTAAGCAAAACATTTAAAGACACGGTAAAAATGTAGGTATTAAGATAAAGAAGGGAGAAAGCGTGAGGCAGGGGAAGAGACAGAGTGGGGGGAAGCCAGGAGGAACTTTTGTCTGGTCCCTGTGCCTTTAGGCCCCATTTCAAACCAGGCAGCATTTGTTGGCGTGGTAGCAGCCCTGATCAAGGAGGGCAGCAGTCAGAGCTAGTCCTTTTGAGTTGTAGAGTACCGCGTCCGTCAAGGAGTTGACCTGCTCCTAGAGGGTGTCACGCTGATCTGAGCTGGTGACACAGAGTTCACTGATGCAGCGAAGGCTTCAGCCCAGCTGTGACACAGAGAAGTTCACTGAAGGTGTCAGTCCAGCTGTTTCAGTCCAGAGTGGCAAGAAGAGGGGTGGCTTGGCTCATTCATGGTCCATCATCCCCTCTTAGATGTCGTCCAAACTGCTCTTAGGGGCCTGGGGTGTTGGTCTCCCTGTGACTTCTTTAAGGCTGGCAGAAGTGGGACGAGGGGAGCAGCCGTCAGAGTGCCTCAGAAGAGGGTCCATCCAAGGGGACATGATAGAACTTAAGAGTTGGCAAAGATCCAGAACATAAGTCCCAGGGTGATAACACACAGCTGAATGGAGACAAAGTTACAGAAGGAAAACTTTGACAACCAGTTGAATACAACTGGACAACTGACTGCACCAGAAGGATACGGTAGCTGTAAGTAGCTCTTTGTGTGCATTAGAATCCTGCCAGCTAAGAATGACTGTGGCTCAGTGCTGGACACTAGAGCTTTCTCTGAGGATTGGAAGGAATATTTGTTGGCCCAGTCTGTTTTGGCTGCTACTGGCCTCTTGTGGCTGATGGCCACTTGAAAACTGGCTTGGACCAATGAAGAGCTGTTTTCTTTAGTTCATCCAATGTTTACAATATTGGGCCAGGGATATAGCTCAGTTGGTGAAGTAATCCTGCTAGGTCCATTCTCTACTACCACATAAAATCAGGCGTGTTAATCTTAGGCAGGCCCAGGATCCCAGGGCTCAGGACCCATCTGCAGCCAGGAGGATCAGAAGTTCGTCTTCAGGTGCACAGTGAGTTACAGGCCAGCCTAGGATACTTGAGTCCTTGTGTTTGTTTTGTTTTTAACTATTTAAAAAAATATTTATTTTATGTGTATGAGTATACCATAGCTGTCCTCAAACACACCAGAAGAGGGCATTACAGATGTTTGTGAGCCACCATGTGGTTCCTGGGAATTGAACTCAGGACCTCTGGCAGAGGATAACCTTTTAACCGCTGAGCCATTTCTCCAGCCCCTGAGACCTTGTCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAGTTAAACGCACATAGTGTTCTTGCAGAGGACCTGACAGGGGTTCTTACCACCTAAGTTGGGCTCCCCACAACCATCTGTAACTCTAGTTCCAGGGAATCTGATGCCCTCTTCTGGACGCTGCAGATACCTGCACCCATATGCACCTCCCCTGTGCAAACACACATATACACATAATTAAAAACTATAAAAATAAATACATCTTAAAAGGAAAAGCCCACCCTGAACAGGCAATCTAGAATATAAAGACTGAAATCATATCGACAACTGCCTAAAGCTTGGGATGGGAGGAGACTGATCAATGATGAGTAATTAAAGTGATGGAAATGTTGTAAAACCTGATTAATTGTAAATTATGACTCAACAAAAATATAGTCTTGTATATATACAAGAAAAGATATTAAAAACAAAAATTTTGAGACATCGTCTTAGCGTTAACTGTCAACTTGACATAGCCTAGAGTCTCTGAGAAGTGTGTCTCGGATCAGTGTGATTGTCTTGATTGTTAACTGATATAGGAGGGTTCAGCCCACTGTGGGCAGCAGTGTTCTGGGCCGTGTGATCCTGAGCTATACAGGAAGGTTAGCTAAGGATGAACCTGCAAGTGAGCTGGCGGCACCACCATCCTGCACGGTTTCTGCTGTGCTTTGGCTGGGAAGTGAGCTCCTTAGTTGGAGCTAATGCTGTCAAACCTGCCTTCAGGTTATTGCCTTACTTCACTCAGTGATGGATTGTGATCTAAGAGTGCAAGCCAAATAGGTCCCAAGTGCTGTGTGTGCCACCACAACGGAGGTGCTAGGGATTAAACCCACACCTCCGTGCATGCCAGGCAAGCACGCTACTGACTTATCGACAAGCCCAGCACATGTTCTAAATATTCTATATTTTAAAAAGCTTTATTATATAAAAAACCATGCAAGTAAATGAAAGTACCACATATCATGCTGGAGACATGGCTCAGTAGTTAAGAGCACTAACTGCTCTTAGAGAGGACCTGAGTTCAGGTCCCAGCATACACAGAGTGGTTTATAACTTCCTGTAGCTCCAGATCCAGAAAGACATGATGTCCCCTCTGGCCTCCTTGGGCACTACAGTCACATGCACATACCCCCACACGTACATATAAATAATAAAAGAAAAAATTTTAAGGGTTGGAGAGATGGCTCAGCAGTTAAGAATACTGTCTGCTCTTCCAGAGGTCCTGAGTTCAATCCCTAGGAACCACATGGTGGCTCACAGCCATCTGTAATGGGATCTGATGCCCTCTTCTGGCACGCAGGTGTACATGCAGATAGAGCACTCATATATAAAATAAATATTTTAAAAAATCATATATCCAAATTAACCAGACCCAAAGTCTATATAACGTAATAAATTTATATACAGTTAGAATTGGCCTTCTGGCAGAAGCTATGAAACTTCACATTAAATTTTATATTTTTAGTACTGAACAAATTTTAGATTCTTTTTTTTTTTTTTCTTTTTTCTTTTTGTTTTTTCGAGACAGAGTTTCTCTGTGTAGCCCTGGCTGTCGTGGAACACACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCTATTTTAGGTTCTTAGGTTCTTATCCACCACCAACCCCAAAAGACCATGGCAAATCAGAACTAGAACACCTAAGTTTTTGTCGTCATTCACAAATGCCTCGTGCCTGCACTTAGTCTTTCCTCCTCCCATACATTTAGCCTTTCTTGTTCTCTTCTCTCTGTGTTGTGCTGTACCCACATGAACATGTGTGGCTTTAGCTTGCATTTCCCTCATGGGAAATGAACCTGGCTAACTTTTCACCTGATCATTGGTCGTACGTAGATCTTCCTTGAGGAAATAATTATTTGGAATTTATTTTGGTGGTGCTGGAGATCAAACGCAGGCTCTTCTAGATGCTACTCAGCGTTCCAGGGCTCAGCTGCACACCTAAGCACCGAGATTATCATTTCTCACTGTTATTAGACTTCATATATATGTTAGAATTGTATATGTGAGCCGGCAGTGGTGACGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCTTGGTCTACAGAGTGAGTTCCAGGATAGCCAGGACTGCACAGAGAAACCCTGTCTCGAAAAACCAATTAAAAAAAAAAGAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACATACACAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCACCTCTCTAGTCCTTGCCAGGCCATTTTCTACACATTTCTGCCTGTTCTGTAATGGAGAACCTGACATGAGCCTGACACTGATGTTTATCTCCTTACAG
Seq C2 exon
GGAAATCTGCCTTACACTGGGCTGCAGCTGTGAACAACGTGGAGGCTACCTTGGCTCTGCTGAAAAATGGAGCCAACAAGGACATGCAGGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038146-Notch3:NM_008716:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(14.1=26.0),PF127962=Ank_2=PU(30.9=58.0)
A:
NA
C2:
PF127962=Ank_2=FE(34.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: