MmuINT0111268 @ mm10
Intron Retention
Gene
ENSMUSG00000070564 | Ntn5
Description
netrin 5 [Source:MGI Symbol;Acc:MGI:2685330]
Coordinates
chr7:45684022-45686825:+
Coord C1 exon
chr7:45684022-45684498
Coord A exon
chr7:45684499-45686576
Coord C2 exon
chr7:45686577-45686825
Length
2078 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
3' ss Seq
AACCTTTCACTCCCCCCCAGGCC
3' ss Score
9.37
Exon sequences
Seq C1 exon
ACGCACTTGGGGCAGGAGGATGCAGGATGGGGAGGGGCTGGCTGGCTTGGGGTCGGCCAAAAGCAGGGGCTGGCAAGCTAAACTCCAGAGGTGCTGGGGCAAGTGGGAACAGGCCAGGACCCCAATCCCAGAACCCCAAGCTGTAGTCATACCCCTACCTGCTTGGATCCTTCTAGGCCGGCTTGTTTGGGGCCACCAAGCTTCAAGCCTGCTGGGGGCGACAGTGCTCCTGTCCCACGCAGTCTCGGGTGGCATGGCTGGCAAGGGTCCCTGTGGGAAAGCGTGGCTGCTGTTGGCTAGGGTTTGGGTGGGCGGTAGTGTTGGATTCTGCGGGCTCTGCTTTCAGCTCCCGCCCAGAACCCCCACTAGCCTGGGCCTGAGAACAGCCACTCTCACTCCTCCCGAGAGCCCTCCAAGTGCTTCTCCTACAGAAGAGTGTGGGGATGACCGACTACAGGACACTCTTTTCTTCTCCAG
Seq A exon
GCAGGTTTGACCAATGGCTGGGCCCTAATAGCCAGGTAGGAGGTGCATGCTGAAGAGGGGCAGGCAGGCAGAGTCCCTTATGGATCCCACTGGCCCAGGGAATTTGGATGGGCCTGCCACTGAGAGGTAGGAATGCTGTAGGCCCAAACGGGCAAGGGCTAGTTTCTGCCTAACCCCAAGAACACAGAGAACTCACAGCCTGGTACTTCACGGTGTTGAGAGCCGGAAGGTGGGACCTTGAAATTACCTAGCAAGAAACGTGTTTACATGAGGGGCTGGGGTGGGGGAGGCTATGGGTGCATAATGGCTCAGACTCCCGGGGGCAGGGAGTCTATGGACTGGGCAAGGGAGGCACCCTGCCTGGGAAATGTCAGTGGAGCACAGGGCTCTGATGTCTGGAGGTAAGGGTACATGCAGGGGGCTCAGGAAAGTCCCAAGATCCCCAGTCCTATGTGGGGGAAGCTGAAAGCCTTAGTCCTCTGGCTCCTAGCACTCCTTAGGCTCTGGATTTCTGGTTTCTAAGTGCCTTGGCATCGGGCACACACCTTATGCCACCTCCTGCTTTTTTTCCTCCCATATCATCTACCCCCAGCACTGGCCCCCATCTGCTCGGGGGCTGAGTGCTTGTGGAGTGTGGAGGGATTTGGGTCCAGGTCTGAGATTTGGGGTAGCAAGTGGGGCCACCTCCCAGCAAGTCCCAGAAAAGTAAGTGCAGGGCCCCAACACCCTGAGCCCTAAAGGAAGGCCAGGCTCTGCCTTCCCAGTACCTGAGGGGTCTGCTCTCTAACTCCAAGGCTTTGTTGGTTTCCAGCTCCTTCAGCACCACCTTCCCTCAGCACTCTTCTCTGGCTACACACCTGGAGGGGAAAGGGTTAAGGGTGGAGGGCTGGAGTGGGTGGCAGAGAGGCCAGGGTTTTTTGGCAATAATCCGCCTTCCGTGCCCTGGGTGTGGAGAACAAGGTTAGAACCCCATGTGGGAAAGGCTTCCACTCTGACCCACGTGGGCCAAGGCCTCTTCTTCTGATTTTCTGCCAGGCAGTAGTAGCTCTCCTCTCCCTCTCGAGCCTCCCCTGGGCTTTCATGCCTGTCTCTGAGCCTACCTGCTCTTCCCTCCCAGCCCCAGAGCCTCTAGCTTCATGCCATCCAACTACCCAGCCGGACACCCGGTCCTCTGCCCTGCCCTGTCTAGCCTCCGGCTTTCCCCGGGTCTGTGCTGGACTCTGCTCCTCTTCTCTGTGGGCTTCCTCTCTCGGCCAGGCTCCTCCATCTCTTCTCTGTGGGCTTCCTCTCTCGGCCAGGCTCTTCCATCTCTTCTCTGTGGGCTTCCTCTCTCGGCCAGGCTCCTCCATCTCTTCCGTGACTCGCTCTCCTAGGTTTTCACATCTGTCGGTCCTGCTGGCTCCTCATCTCCCCTCACCCTCTCCCCAGGGCCTCTACCCCTCGACACTGATGGATAACTTTGGGGTGTTAAGCTCTGGATTAGTTCAGGCAAAATTCTCAATTTTGCTTGCGTTCTTTCCCTGTGGGTTATGTAAACAGTAATTCTCCCCAGATGGAACTATTTTCCTCGCTTCGAGGCAGCTGGGGAGGGGGCTCAGGCAGGACCAGGAGGAATGCAGGGTCTGCAGGAATCCTCAGCAGGGTGGACACCAACTGACCCCATCTGCCACCTCTGTCTACAGGTGCCGGCTCTACTGTGACCACGCCCATTACCCTCAGCCTCTTGCTCCTCCTTAGCCAGGCCACCTCAGACCCATGCTATGATCCAGGAGGGCGCCCTCGCTTTTGCCTCCCACCAGTGACCCAGTTGGTTGGCAAGGCAGCAGCCCCCTGCTCTCAGACCTGTGCTCTTCCTGCAGCCAGCCCTGGCCCTGCCTGCAACAGTAGTCTGACCCTGGACCTGGACGGCTCCTTCCTCTTGACATCTGTGACCCTGCGTTTCTGCACAGCGGGACCTCCAGCCCTGGTTCTTTCTGCTGCCTGGGCCACTGGGGGGCCCTGGAGGCCACTATGGCGTAGGCCTGCCTGGCCTGGGGCTCTGGGGGGCCCCAAGAAGGTAACCTTTCACTCCCCCCCAG
Seq C2 exon
GCCCCAAGACCAGGATAGTGGCCAGCTACCTCCGTGTGGAGTTCGGGGGAAAAGCAGGGCTGGTGACCACTGGAGTAAGAGGCCGCTGCCAGTGCCACGGCCACGCTGCCCGCTGTGCCACTCGGGCCCAGCCCCCACGCTGCCGCTGCCGCCACCACACCACTGGCCCAGGGTGTGAGAGCTGTCGCCCATCCCATCGAGACTGGCCCTGGCGACCTGCCACACCCCAGCACCCTCACCCGTGCTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070564:ENSMUST00000182750:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=63.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types