MmuINT0111292 @ mm9
Intron Retention
Gene
ENSMUSG00000035513 | Ntng2
Description
netrin G2 [Source:MGI Symbol;Acc:MGI:2159341]
Coordinates
chr2:29054334-29056468:-
Coord C1 exon
chr2:29056394-29056468
Coord A exon
chr2:29054436-29056393
Coord C2 exon
chr2:29054334-29054435
Length
1958 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TCGTTTCTCATCTCTCTAAGCTG
3' ss Score
5.41
Exon sequences
Seq C1 exon
GTCAGACCAAGCCACCTACTATGGCCCCCCTTGGGGACAGCTCCTTCTGGCCCCAGGTGTCCTCCAGTGCAGAAG
Seq A exon
GTATGGGGGCAGGGCCTATGCCAGACCTGAGACCCCAGGAGCTCCATTTTAGACCCTCCCTTGTAGTAGGGGTAGCAGGCTTATATGGTGGGGGGCCCCAAGAACTGAAAGTCGTGGGGTGGCAGAACTTAGGGTCAAAGCAATGAGGTAAAAGGCCTGTAGCTACCCCTTTACCCTTACTCCCAACTCTACCCCTATTGGAAGCCAGTAGGTAACATCTGTAACGCTTCTCCTAGGGCTTCAGAGTGTAGAGAAGGACGTCCTTCGTAACAGGAACATCACTTCTCCCTCCTCACAATGTGGGGCACATGTAGGATACCTAGGCAGCTGATGGCACCCAGAGAGGGTCAGATGGACCAGAATAGGCGTAGCTATGAGTTATGATGGTGACAGAGAAAGTCTGAGGCAAAGACCCAGCAGCCTAACCAGTTAAGTGAAGGCATGAACCATGTAGAAGCCCCCCAGGACCAGGTCAAGAGAATTAATTATTCTCCTACTGTGGGGAAACACCCAGGACAGGGACTCATCGGTAGCCATAGATGGATGTGGGTTAAGTTGGGCTAGCTTGACTCCTCAGAGAGGAAGGTTGTCCTAAGCTGTCCCCCAGCTGACTTGTCCTAGGTTCTATTGCCCTTGCCCCACCCCATCCAACACCACAAGCTCCCCCCTCCAACCCCCCAACTCTCCCCCCTCCAACCCCCCAACTCTCCCCCCTCCGGAATGAATGAGCAGTGAGGCAGGCTTTGAGCGCCCTCTACTGGCAAATGGTTGCACAACTGAAGAGTCAGAAGTTCTTAGAGCATCCTAGAGGTTCCTTAATCAACACATCCTCTTTAGAGATGAATACATGCGTCATCTCCTGCCCTGGCCCCACTGAAGAGCCACAGAGTCCTAGAGGGAAGCACAGAGCCTTTTTTTCTATAATAACAGCATGCTTACCTCCAAGAATGGAGCAGGGCTCTGGTGGGATTCCAGGCAGGGAAGGGTAGTGCTGCTGCGTTCTTGGCTTGATGACACTTTAGAGGACAGCAAAGGACCCATCCTAGCCAGAGTAGAAGAATGTGCTCCAAAGGAAAGAAGATGCAGTCTTAAAAATATTTAACATGGCTGGGCATGGTGGTCAGCGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGATCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAACAAAACAAAACAAAACAAAAACAAAAACAAAAACAAAAAACAAAAACAAAAACAAAAACAAAAAATATTTAATGTATTTATTTTATGTGTATGTTTTGCTTGCACGTATGTATGTGTATCACGTGTGTGCCTGGTGCCCATGGAGGTCAGAAGAATGCTAGAACTAGAGTTACAGATAGTTATGAACTAACACACAGATACTGGGAACTGAACCCATGTCCTCTCTAAGAACAACAAGCATTCTTAACCACTGAACAATCCATCTCTCCAACCCCAAGATGCAGTCTTTAATGCCAGGTTTAGCCTGGGGACTTGATGACCAGGAGAGATTAGGGGACGGGGGAAAGAGCAGAAGGGCCAAATATCTCTCCGTGTCAGCAAATGTCTTAGCAGCAGGTAGAGGGTGTTAGGAGATGAAGAAGGTACTTGGGTACTGCTCCAGAGGATATGTAGGTGTTCTCGAGGGACCAGCGGCAGTAGGTACCCACTGTCATGGCTACAGGGTGCTTTAGCCTGGGACTCTTAGAAGAACCACATCTTAAACCTGAGGGCCATGTAGTCTCTCCCTACCTCGAAAGTGAACAGGTAACATGGTTGCCTGGGGCCAGCCCAAGGCACTCGGGAGCTTTGGTCTAGCTTCTCCCTTGGTATGGATGGCTTCCTCCGTGGCTGGACCGTAGCAGGTGTAAGAACTCGTTTCTCATCTCTCTAAG
Seq C2 exon
CTGTAGCTATCTCTGTCGCTGTCCCTTCCCAAGCCAAGGACTCTACGCTTTTCGAGCTCAAGCCCAGATCTCCTCAGGTGATACCCATTGAAGAATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035513-Ntng2:NM_133501:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: